[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-1-1
DESCRIPTION : mmu-mir-1-1 MI0000139 Mus musculus miR-1-1 stem-loop
CHROMOSOME : 2
SPAN : 180123753 - 180123829
LENGTH : 77
SEQUENCE : GCTTGGGACACATACTTCTTTATATGCCCATATGAACCTGCTAAGCTATGGAATGTAAAGAAGTATGTATTTCAGGC
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-1
ACCID : MI0000139
PARENT : mmu-mir-1-1
CHROMOSOME : 2
START : 180123753
STOP : 180123829
OFFSET : 49..70
SEQUENCE : TGGAATGTAAAGAAGTATGTAT
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________________
GCTTGGGACACATACTTCTTTATATGCCCATATGAACCTGCTAAGCTATGGAATGTAAAGAAGTATGTATTTCAGGC REF 2 180123753 - 180123829
TGGAATGTAAAGAAGTATGTAT MATURE 2 180123802 - 180123899 mmu-miR-1 +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................GGAATGTAAAGAAGTATGTAT........ read_377021_2_1_0_0_3_0 MATURE 6 37.50 3 30.00 3 50.00 21
.................................................GGAATGTAAAGAAGTATGgag........ read_31528_0_2_1_1_0_0 MATURE 4 25.00 3 30.00 1 16.67 gag 18
.................................................GGAATGTAAAGAAGTATGTAc........ read_97595_0_0_0_1_0_1 MATURE 2 12.50 0 0.00 2 33.33 c 20
.................................................GGAATGTAAAGAAGTATGga......... read_108128_0_0_1_0_0_0 MATURE 1 6.25 1 10.00 0 0.00 ga 18
.................................................GGAATGTAAAGAAGTATGTAg........ read_78638_0_1_0_0_0_0 MATURE 1 6.25 1 10.00 0 0.00 g 20
.................................................GGAATGTAAAGAAGTATGT.......... read_9742_0_1_0_0_0_0 MATURE 1 6.25 1 10.00 0 0.00 19
...................................................AATGTAAAGAAGTATGTAcct...... read_53476_1_0_0_0_0_0 MATURE 1 6.25 1 10.00 0 0.00 cct 18
---------- ---------- ----------
16 10 6
(62.50) (37.50)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 10 6 16 100.00%
---------- ---------- ----------
10 6 16
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