[BEGIN]

REFERENCE HAIRPIN
******************************************************************************************************************
ID                 : mmu-let-7e
DESCRIPTION        : mmu-let-7e MI0000561 Mus musculus let-7e stem-loop
CHROMOSOME         : 17
SPAN               : 17967316 - 17967408
LENGTH             : 93
SEQUENCE           : CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC
OVERHANG THRESHOLD : 75%
******************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-let-7e
ACCID      : MI0000561
PARENT     : mmu-let-7e
CHROMOSOME : 17
START      : 17967316
STOP       : 17967408
OFFSET     : 15..36
SEQUENCE   : TGAGGTAGGAGGTTGTATAGTT
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________________
CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC REF                  17                   17967316 - 17967408  
              TGAGGTAGGAGGTTGTATAGTT                                                          MATURE               17                   17967331 - 17967444  mmu-let-7e           +                    
_____________________________________________________________________________________________

                                                                                         -SEQ-                     -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............GAGGTAGGAGGTTGTATAGTT..........................................................   read_127457_14_8_4_2_4_9       MATURE           41        20.50           26        19.40           15        22.73                        21   
...............GAGGTAGGAGGTTGTATAGT...........................................................    read_409755_8_5_8_0_5_5       MATURE           31        15.50           21        15.67           10        15.15                        20   
...............GAGGTAGGAGGTTGTATAGTTt.........................................................    read_313240_5_3_5_2_2_0       MATURE           17         8.50           13         9.70            4         6.06            t           21   
...............GAGGTAGtAGGTTGTATAGTTGA........................................................    read_279297_3_5_4_1_0_2       MATURE           15         7.50           12         8.96            3         4.55                      7T15   
...............GAGGTAGcAGGTTGTATAGTT..........................................................    read_183330_2_2_5_1_1_4       MATURE           15         7.50            9         6.72            6         9.09                      7C13   
...............GAGGTAGGAGGTTGTATAG............................................................    read_373555_2_3_3_1_0_2       MATURE           11         5.50            8         5.97            3         4.55                        19   
...............GAGGTAGGAGGTTGTATAGTTa.........................................................    read_360996_2_2_2_0_1_1       MATURE            8         4.00            6         4.48            2         3.03            a           21   
...............GAGGTAGcAGGTTGTATAGT...........................................................    read_205627_1_3_3_0_0_1       MATURE            8         4.00            7         5.22            1         1.52                      7C12   
...............GAGGTAGGAGGTTGTATAGTTG.........................................................    read_327540_1_2_1_1_0_1       MATURE            6         3.00            4         2.99            2         3.03                        22   
...............GAGGTAGGAGGTTGTATAGTTGt........................................................    read_269784_2_0_1_1_0_0       MATURE            4         2.00            3         2.24            1         1.52            t           22   
...............GAGGTAGGAGGTTGTATAtTT..........................................................    read_184523_0_1_1_1_0_0       MATURE            3         1.50            2         1.49            1         1.52                      18T2   
...............GAGGTAGGAGaTTGTATAGTT..........................................................    read_171234_0_0_3_0_0_0       MATURE            3         1.50            3         2.24            0         0.00                     10A10   
...............GAGGTAGGAGGTTGTATA.............................................................    read_153129_0_0_2_1_0_0       MATURE            3         1.50            2         1.49            1         1.52                        18   
...............GAGGTAGGAGGTTGTATAGTTat........................................................    read_265076_1_0_0_0_0_1       MATURE            2         1.00            1         0.75            1         1.52           at           21   
...............GAGGTAGGAGGTTGTATAaa...........................................................    read_385719_0_0_0_0_1_1       MATURE            2         1.00            0         0.00            2         3.03           aa           18   
...............GAGGTAGGAGGTTGTATAGTa..........................................................    read_160716_0_1_0_0_0_1       MATURE            2         1.00            1         0.75            1         1.52            a           20   
...............GAGGTAGGAGGTTGTAT..............................................................    read_249562_0_0_1_0_1_0       MATURE            2         1.00            1         0.75            1         1.52                        17   
...............GAGGTAGGAGtTTGTATAGTT..........................................................    read_103692_0_0_0_0_1_1       MATURE            2         1.00            0         0.00            2         3.03                     10T10   
..................GTAGGAGGTTGTATAGTT..........................................................    read_250765_0_0_0_1_0_1       MATURE            2         1.00            0         0.00            2         3.03                        18   
...............GAGGgAGGAGGTTGTATAGTTaa........................................................    read_337835_0_0_0_0_1_0       MATURE            1         0.50            0         0.00            1         1.52           aa         4G16   
...............GAGGTAGGAGGTTGgATAGT...........................................................     read_33459_1_0_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      14G5   
...............GAGGTAGGAGGTTGTATAa............................................................      read_1933_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         1.52            a           18   
...............GAGGTAGGAGGTTGaATAGTTt.........................................................    read_155105_1_0_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00            t         14A6   
...............GAcGTAGGAGGTTGTATAGTT..........................................................      read_7727_0_1_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      2C18   
...............GAGGTAGGAGGTTGTATAGTTtt........................................................     read_48359_0_0_0_1_0_0       MATURE            1         0.50            0         0.00            1         1.52           tt           21   
...............GAGGTAGGAGGTTGTATAGat..........................................................     read_78833_0_0_1_0_0_0       MATURE            1         0.50            1         0.75            0         0.00           at           19   
...............GAGGTAGGAGGTTGcATAGTTaa........................................................    read_100336_0_1_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00           aa         14C6   
...............GAGGTAGaAGGTTGTATAGTT..........................................................     read_76393_0_0_1_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      7A13   
...............GAGGTAGGAGGTTGTATAGTTtat.......................................................    read_254971_0_0_1_0_0_0       MATURE            1         0.50            1         0.75            0         0.00          tat           21   
...............GAGGTAGGAGGTTGTAcAGTTt.........................................................    read_235112_0_1_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00            t         16C4   
...............GAGGTAGGAGGTTGgATAGTT..........................................................    read_361998_0_0_1_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      14G6   
...............GAGGTAGGAGGTTGTATAtTTt.........................................................    read_328589_0_0_0_0_1_0       MATURE            1         0.50            0         0.00            1         1.52            t         18T2   
...............tAGGTAGGAGGTTGTATAGTT..........................................................     read_51030_0_0_0_1_0_0       MATURE            1         0.50            0         0.00            1         1.52                        20   
...............GAGGTAGGAGGTTGTATAGTTc.........................................................    read_298674_1_0_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00            c           21   
...............GAGGTAGGAGGTTGTATAGTgt.........................................................    read_133601_0_1_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00           gt           20   
...............GAGGTAGGAGGTTGcATAGT...........................................................    read_302173_0_0_1_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      14C5   
...............GAGGTAGGAGGTTGcATAGTT..........................................................     read_14167_0_0_0_0_1_0       MATURE            1         0.50            0         0.00            1         1.52                      14C6   
...............GAGGTAGaAGGTTGTATAGT...........................................................     read_38684_1_0_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      7A12   
...............GAGGTAGGAGGTTGTATAGa...........................................................      read_7785_0_0_0_0_1_0       MATURE            1         0.50            0         0.00            1         1.52            a           19   
...............GAGGTAGGAGaTTGTATAGT...........................................................    read_159201_1_0_0_0_0_0       MATURE            1         0.50            1         0.75            0         0.00                      10A9   
...............GAGGaAGGAGGTTGTATAGTTa.........................................................    read_337818_0_0_1_0_0_0       MATURE            1         0.50            1         0.75            0         0.00            a         4A16   
.............CTGAGGTAGtAGGTTGTATAGTT..........................................................    read_410996_0_0_0_0_1_0       MATURE            1         0.50            0         0.00            1         1.52                      9T13   
                                                                                                                                         ----------                ----------                ----------   
                                                                                                                                                200                       134                        66                                          
                                                                                                                                                                      (67.00)                   (33.00)                                       




*** OTHER ***
_____________________________________________________________________________________________
CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC REF                  17                   17967316 - 17967408  
              TGAGGTAGGAGGTTGTATAGTT                                                          MATURE               17                   17967331 - 17967444  mmu-let-7e           +                    
_____________________________________________________________________________________________

                                                                                         -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................................TATACGGCCTCCTAGCTTT...............   read_232274_0_0_0_1_0_0        OTHER            1       100.00            0            0            1       100.00                        19   
                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                 1                         0                         1                                          
                                                                                                                                                                      (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             134              66             200          99.50%
          OTHER               0               1               1           0.50%
                     ----------      ----------      ----------                
                            134              67             201                



[END]
