[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************************************
ID : mmu-let-7e
DESCRIPTION : mmu-let-7e MI0000561 Mus musculus let-7e stem-loop
CHROMOSOME : 17
SPAN : 17967316 - 17967408
LENGTH : 93
SEQUENCE : CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC
OVERHANG THRESHOLD : 75%
******************************************************************************************************************
TARGET
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CATEGORY : MATURE
ID : mmu-let-7e
ACCID : MI0000561
PARENT : mmu-let-7e
CHROMOSOME : 17
START : 17967316
STOP : 17967408
OFFSET : 15..36
SEQUENCE : TGAGGTAGGAGGTTGTATAGTT
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________________________________
CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC REF 17 17967316 - 17967408
TGAGGTAGGAGGTTGTATAGTT MATURE 17 17967331 - 17967444 mmu-let-7e +
_____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............GAGGTAGGAGGTTGTATAGTT.......................................................... read_127457_14_8_4_2_4_9 MATURE 41 20.50 26 19.40 15 22.73 21
...............GAGGTAGGAGGTTGTATAGT........................................................... read_409755_8_5_8_0_5_5 MATURE 31 15.50 21 15.67 10 15.15 20
...............GAGGTAGGAGGTTGTATAGTTt......................................................... read_313240_5_3_5_2_2_0 MATURE 17 8.50 13 9.70 4 6.06 t 21
...............GAGGTAGtAGGTTGTATAGTTGA........................................................ read_279297_3_5_4_1_0_2 MATURE 15 7.50 12 8.96 3 4.55 7T15
...............GAGGTAGcAGGTTGTATAGTT.......................................................... read_183330_2_2_5_1_1_4 MATURE 15 7.50 9 6.72 6 9.09 7C13
...............GAGGTAGGAGGTTGTATAG............................................................ read_373555_2_3_3_1_0_2 MATURE 11 5.50 8 5.97 3 4.55 19
...............GAGGTAGGAGGTTGTATAGTTa......................................................... read_360996_2_2_2_0_1_1 MATURE 8 4.00 6 4.48 2 3.03 a 21
...............GAGGTAGcAGGTTGTATAGT........................................................... read_205627_1_3_3_0_0_1 MATURE 8 4.00 7 5.22 1 1.52 7C12
...............GAGGTAGGAGGTTGTATAGTTG......................................................... read_327540_1_2_1_1_0_1 MATURE 6 3.00 4 2.99 2 3.03 22
...............GAGGTAGGAGGTTGTATAGTTGt........................................................ read_269784_2_0_1_1_0_0 MATURE 4 2.00 3 2.24 1 1.52 t 22
...............GAGGTAGGAGGTTGTATAtTT.......................................................... read_184523_0_1_1_1_0_0 MATURE 3 1.50 2 1.49 1 1.52 18T2
...............GAGGTAGGAGaTTGTATAGTT.......................................................... read_171234_0_0_3_0_0_0 MATURE 3 1.50 3 2.24 0 0.00 10A10
...............GAGGTAGGAGGTTGTATA............................................................. read_153129_0_0_2_1_0_0 MATURE 3 1.50 2 1.49 1 1.52 18
...............GAGGTAGGAGGTTGTATAGTTat........................................................ read_265076_1_0_0_0_0_1 MATURE 2 1.00 1 0.75 1 1.52 at 21
...............GAGGTAGGAGGTTGTATAaa........................................................... read_385719_0_0_0_0_1_1 MATURE 2 1.00 0 0.00 2 3.03 aa 18
...............GAGGTAGGAGGTTGTATAGTa.......................................................... read_160716_0_1_0_0_0_1 MATURE 2 1.00 1 0.75 1 1.52 a 20
...............GAGGTAGGAGGTTGTAT.............................................................. read_249562_0_0_1_0_1_0 MATURE 2 1.00 1 0.75 1 1.52 17
...............GAGGTAGGAGtTTGTATAGTT.......................................................... read_103692_0_0_0_0_1_1 MATURE 2 1.00 0 0.00 2 3.03 10T10
..................GTAGGAGGTTGTATAGTT.......................................................... read_250765_0_0_0_1_0_1 MATURE 2 1.00 0 0.00 2 3.03 18
...............GAGGgAGGAGGTTGTATAGTTaa........................................................ read_337835_0_0_0_0_1_0 MATURE 1 0.50 0 0.00 1 1.52 aa 4G16
...............GAGGTAGGAGGTTGgATAGT........................................................... read_33459_1_0_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 14G5
...............GAGGTAGGAGGTTGTATAa............................................................ read_1933_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 1.52 a 18
...............GAGGTAGGAGGTTGaATAGTTt......................................................... read_155105_1_0_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 t 14A6
...............GAcGTAGGAGGTTGTATAGTT.......................................................... read_7727_0_1_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 2C18
...............GAGGTAGGAGGTTGTATAGTTtt........................................................ read_48359_0_0_0_1_0_0 MATURE 1 0.50 0 0.00 1 1.52 tt 21
...............GAGGTAGGAGGTTGTATAGat.......................................................... read_78833_0_0_1_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 at 19
...............GAGGTAGGAGGTTGcATAGTTaa........................................................ read_100336_0_1_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 aa 14C6
...............GAGGTAGaAGGTTGTATAGTT.......................................................... read_76393_0_0_1_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 7A13
...............GAGGTAGGAGGTTGTATAGTTtat....................................................... read_254971_0_0_1_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 tat 21
...............GAGGTAGGAGGTTGTAcAGTTt......................................................... read_235112_0_1_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 t 16C4
...............GAGGTAGGAGGTTGgATAGTT.......................................................... read_361998_0_0_1_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 14G6
...............GAGGTAGGAGGTTGTATAtTTt......................................................... read_328589_0_0_0_0_1_0 MATURE 1 0.50 0 0.00 1 1.52 t 18T2
...............tAGGTAGGAGGTTGTATAGTT.......................................................... read_51030_0_0_0_1_0_0 MATURE 1 0.50 0 0.00 1 1.52 20
...............GAGGTAGGAGGTTGTATAGTTc......................................................... read_298674_1_0_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 c 21
...............GAGGTAGGAGGTTGTATAGTgt......................................................... read_133601_0_1_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 gt 20
...............GAGGTAGGAGGTTGcATAGT........................................................... read_302173_0_0_1_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 14C5
...............GAGGTAGGAGGTTGcATAGTT.......................................................... read_14167_0_0_0_0_1_0 MATURE 1 0.50 0 0.00 1 1.52 14C6
...............GAGGTAGaAGGTTGTATAGT........................................................... read_38684_1_0_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 7A12
...............GAGGTAGGAGGTTGTATAGa........................................................... read_7785_0_0_0_0_1_0 MATURE 1 0.50 0 0.00 1 1.52 a 19
...............GAGGTAGGAGaTTGTATAGT........................................................... read_159201_1_0_0_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 10A9
...............GAGGaAGGAGGTTGTATAGTTa......................................................... read_337818_0_0_1_0_0_0 MATURE 1 0.50 1 0.75 0 0.00 a 4A16
.............CTGAGGTAGtAGGTTGTATAGTT.......................................................... read_410996_0_0_0_0_1_0 MATURE 1 0.50 0 0.00 1 1.52 9T13
---------- ---------- ----------
200 134 66
(67.00) (33.00)
*** OTHER ***
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CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC REF 17 17967316 - 17967408
TGAGGTAGGAGGTTGTATAGTT MATURE 17 17967331 - 17967444 mmu-let-7e +
_____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................................TATACGGCCTCCTAGCTTT............... read_232274_0_0_0_1_0_0 OTHER 1 100.00 0 0 1 100.00 19
---------- ---------- ----------
1 0 1
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 134 66 200 99.50%
OTHER 0 1 1 0.50%
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134 67 201
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