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/*
    ANISEED, NISEED System and Database
    Copyright (C) 2007 Olivier Tassy, Fabrice Daian, Patrick Lemaire

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.

*/
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<!--<font color="#000000" size="3"><b><div style="background-image: url('back_menu11.jpg');padding:3px;">Genes/Clones</div></b></font><br>-->
<font color="#000000" size="-1" style="background-color:c4bfd6;"><i>&nbsp;Genes&nbsp;</i></font><br>

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<a href="gene-search.php">Find a Gene</a>
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</font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Genomicsearch_Gene"><img border="0" src="pictures/bulb.gif"></a>
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<font color="#456898" size="2"><b><a href="GO-search.php">Find Gene models by their gene ontology annotations</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Genomicsearch_FunctionnalAnnotation"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="IP-search.php">Find Gene models by their interpro annotations</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Genomicsearch_FunctionnalAnnotation"><img border="0" src="pictures/bulb.gif"></a><br>
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<br>

<font color="#000000" size="-1" style="background-color:c4bfd6;"><i>&nbsp;Clones&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="clone-search.php">Find a cDNA clone by its identifier</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Genomicsearch_Clone"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="cloneseq-search.php">Find a clone sequence by its identifier</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>

<br>
<font color="#000000" size="-1" style="background-color:c4bfd6;"><i>&nbsp;Cis-Regulatory Regions&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="reg-region-search.php">Find Cis-regulatory regions</a></b></font><!--<img src="pictures/bulb.gif">--><br>

<br>
<font color="#33CDB8" size="2" style="background-color:c4bfd6;"><b><a href="submit_data.php">SUBMIT YOUR DATA!!!</a></b></font>

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<!--<td width="10%"><div style="background-image: url('onglet12.jpg');" id="menuH"><a href="blast-search.php">BLAST search</a></div></td>-->
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<a href="http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis"><font color="black" size="2"><b>Go to the Aniseed genome browser</b></font></a>
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" onmouseover="this.style.color='#E00000';" onmouseout="this.style.color='black'">Explore Genome</dt></div>
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<a href="blast-search.php"><font size="2"><b>BLAST search</b></font></a><br><br>
<a target="_blank" href="http://localhost/ciona-bin/gbrowse/intestinalis"><font size="2"><b>Go to the Aniseed genome browser</b></font></a><br>
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<td width="10%"><div style="background-image: url('onglet15-2.jpg');" id="menuH">
<dt onclick="
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this.style.color='#E00000';" onmouseover="this.style.color='#E00000';" onmouseout="this.style.color='black'">Explore Anatomy</dt></div>

<!--- anatomy domain search -->
<div id="anatomy_domain" >
<!--<font color="#000000" size="3"><b><div style="background-image: url('back_menu15.jpg');padding:3px;">Anatomy data</div></b></font><br>-->
<font color="#000000" size="-1" style="background-color:lightgray;"><i>&nbsp;Anatomy&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="anatomy-search.php">Display the anatomical ontology for a given
stage</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Search_anatomy_ontology"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="anatomy-search-embryo.php">Find an anatomical territory on an embryo scheme</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Search_anatomy_scheme"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="fate-search.php">Find territories by their fates</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Search_territories_fates"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="lineage-search.php">Find progeny/precursors of a territory</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Search_progeny_precursors"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="ID_anat.php">Batch queries</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br />
<br>

<font color="#000000" size="-1" style="background-color:lightgray;"><i>&nbsp;Cell shapes and 3D arrangements in a given embryo&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="embryo-neighbour-search.php">Find neighbours of a cell</a></b></font>&nbsp;&nbsp;<a href="http://crfb.univ-mrs.fr/aniseed/help.php#Search_neighbours"><img border="0" src="pictures/bulb.gif"></a><br>
<font color="#456898" size="2"><b><a href="embryo-biometry-search.php">Find cells by their shapes</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>
<font color="#456898" size="2"><b><a href="embryo-division-search.php">Find asymetric cleavages</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>
<font color="#456898" size="2"><b><a href="biom-clust.php">Cluster cell shapes</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>
<font color="#456898" size="2"><b><a href="embryo-collection.php">Show all embryos present into the database</a></b></font><br><br>


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<!-- End of anatomy domain search -->


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<td width="10%"><div style="background-image: url('onglet16.jpg');" id="menuH">
<dt onclick="expression_domain.style.display='block';
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genomic_domain.style.display='none';
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litterature.style.display='none';
" onmouseover="this.style.color='#E00000';" onmouseout="this.style.color='black';" >Expression data</dt></div>



<!--- expression domain search -->
<div id="expression_domain">
<!--<font color="#000000" size="3"><b><div style="background-image: url('back_menu16.jpg');padding:3px;">Expression data</div></b></font><br>-->
<font color="#000000" size="-1" style="background-color:#96d6d8;"><i>&nbsp;Expression Search Tools&nbsp;</i></font><br>

<font color="#456898" size="2"><b><a href="insitu-search-by-molecule.php">Find the In Situs patterns associated to a gene/clone</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>

<font color="#456898" size="2"><b><a href="insitu-search-by-anatomy.php">Find genes expressed in a given territory</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>

<font color="#456898" size="2"><b><a href="insitu-search-by-regreg.php">Find the In Situs patterns associated to a regulatory region report gene assay</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>

<font color="#456898" size="2"><b><a href="insitu-search-NEW.php">Advanced search (New Page)</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>
<font color="#456898" size="2"><b><a href="insitu-search.php"><i>Advanced search (OLD Page)</i><a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>
<br>

<font color="#000000" size="-1" style="background-color:#96d6d8;"><i>&nbsp;Other Expression tools&nbsp;</i></font> <br>

<font color="#456898" size="2"><b><a href="DDD-search.php">Digital Differential Display (DDD)</a></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>

<font color="#456898" size="2"><b><!--<a href="">--><font color="gray">STEP-BLAST: Find synexpressed genes (all stages)</font><!--</a>--></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>

<font color="#456898" size="2"><b><font color="gray">Find coexpressed genes at a given stage</font></b></font>&nbsp;&nbsp;<!--<img src="pictures/bulb.gif">--><br>
<br>
<font color="#33CDB8" size="2" style="background-color:#96d6d8;"><b><a href="submit_data.php">SUBMIT YOUR DATA!!!</a></b></font>


</div>
<!-- End of expression domain search -->
</td>


<td width="10%"><div style="background-image: url('onglet13-2.jpg');" id="menuH">
<dt onclick="expression_domain.style.display='none';
anatomy_domain.style.display='none';
genomic_domain.style.display='none';
about.style.display='none';
download.style.display='none';
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litterature.style.display='block';
" onmouseover="this.style.color='#E00000';" onmouseout="this.style.color='black';">Explore Literature</dt></div>
<div id="litterature">


<small><font color="red"><b><i>NEW</i></b></font></small>&nbsp;&nbsp;<font color="#456898" size="2"><b><a href="bib-search-mol.php">Find articles related to a given Gene</font><br>

<small><font color="red"><b><i>NEW</i></b></font></small>&nbsp;&nbsp;<font color="#456898" size="2"><b><a href="bib-search-anatomy.php">Find articles describing the specification of a given cell fate</font><br>

<font color="#456898" size="2"><b><a href="biblio-search.php">Search articles by Authors or Title words</a></b></font><br>

<font color="#456898" size="2"><b><a href="show-article.php">Show all articles present into the database</a></b></font><br><br>
</div>
</td>


<!--<td width="5%"><div style="background-image: url('onglet17.jpg');" id="menuH"><a href="contributors.php">Contributors</a></div></td>-->
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<dt onclick="expression_domain.style.display='none';
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"  onmouseover="this.style.color='#E00000';" onmouseout="this.style.color='black';">Download</dt></div>
<!--DOWNLOAD -->
<div id="download">
<font color="#456898" size="2"><b><a href="Download_data.php">Download Aniseed data</a></b></font><br>
<font color="#456898" size="2"><b><a href="virtual_embryo.php">Download 3D Virtual Embryo</a></b></font><br>

</div>
<!-- END OF DOWNLOAD -->
</td>


<td width="5%"><div style="background-image: url('onglet11.jpg');" id="menuH">
<dt onclick="expression_domain.style.display='none';
anatomy_domain.style.display='none';
genomic_domain.style.display='none';
about.style.display='block';
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"  onmouseover="this.style.color='#E00000';" onmouseout="this.style.color='black';">About</dt></div>
<!--- ABOUT -->
<div id="about">

<font color="#000000" size="-1" style="background-color:c4bfd6;"><i>&nbsp;About ANISEED&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="aniseed.php">Release notes</a></b></font><br>
<font color="#456898" size="2"><b><a href="publications.php">Publications</a></b></font><br>
<font color="#456898" size="2"><b><a href="http://crfb.univ-mrs.fr/aniseed/ARCHIVE_2.0/">Aniseed V2.0</a></b></font><br><br>




<font color="#000000" size="-1" style="background-color:c4bfd6;"><i>&nbsp;Standard&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="exchange_format.php">MISFISHIE</a></b></font><br>
<font color="#456898" size="2"><b><a href="AMI.php">AMI</a></b></font><br><br>

<font color="#000000" size="-1" style="background-color:c4bfd6;"><i><a href="submit_data.php">&nbsp;Submit your data&nbsp;</a></i></font><br>
<br>




<font color="#000000" size="-1" style="background-color:c4bfd6;"><i>&nbsp;About the Ascidian community&nbsp;</i></font><br>
<font color="#456898" size="2"><b><a href="ascidians.php">What are ascidians ?</a></b></font><br>
<font color="#456898" size="2"><b><a href="http://www.tunicate-portal.org/">Useful link</a></b></font><br>
<font color="#456898" size="2"><b><a href="contributors.php">Aniseed contributors</a></b></font><br><br>
<br>




</div>
<!-- END OF ABOUT -->
</td>





</tr>
</table>
</div>




</td>
<td width="5%">&nbsp;</td>
</tr>


<tr>
<td width="5%">&nbsp;</td> <!--MENU GAUCHE -->
<td width="90%" align="right">

<!--Waiting message at the right place -->
<!--
<div id="waiting_message" style="background-color:white;color:black;">
<br><br><br>
<center>Loading ... please wait ...</center>
<br><br><br>

<center><img src="loading.gif"></center>

</div>
-->
<!-- End of waiting message -->



<div id="anisearch" style="display:block;">
<form style="padding:0px;margin:1px;" name="formulaire_anisearch" action="anisearch2.php" method="POST">
<table>
<tr>
<td valign="center"><img width="110" src="anisearch-2.jpg"></td>
<td valign="center"><input type="text" size="40" name="search"></td>
<td valign="center"><input type="submit" value="Search"></td>
<input type="hidden" name="OP" value="AND">

<input type="hidden" name="blast" value="blast">

<input type="hidden" name="ortho" value="ortho">

</tr>
</table>
</form>
</div>







<!--
<div id="anisearch" style="display:block;">
<form style="padding:0px;margin:1px;" name="formu" action="anisearch2.php" method="POST">
<table style="border:1px solid black;">
<tr>
<td valign="center"><img src="min-box.gif" onclick="anisearch.style.display='none';anisearch_hide.style.display='block';"></a>
<td valign="center"><img width="100" src="anisearch-2.jpg"></td>
<td valign="center"><input type="text" size="80" name="search"></td>
<td valign="center"><input type="submit" value="Search"></td>
</tr>
</table>
</form>
</div>


<div id="anisearch_hide" style="display:none;padding:0px;margin:1px;">
<table style="border:1px solid black;">
<tr>
<td valign="center"><img src="plus-box.gif" onclick="anisearch.style.display='block';anisearch_hide.style.display='none';"></td>
<td valign="center"><img width="100" src="anisearch-2.jpg"></td>
</tr>
</table>
</div>
-->


</td>
<td width="5%">&nbsp;</td>
</tr>

<tr>
<td width="5%"></td>
<td width="90%">

</td>
<td width="5%"></td>
</tr>



<!--BODY -->
<tr>
<td width="5%">&nbsp;</td> <!--MENU GAUCHE -->
<td width="90%" id="mybody" onclick="expression_domain.style.display='none';genomic_domain.style.display='none';anatomy_domain.style.display='none';about.style.display='none';download.style.display='none';gbrowse.style.display='none';litterature.style.display='none';">

