<!--search a gene by its GO term(s) associated-->
<html>
<head>
<title>ANISEED - Gene Ontology search (Ciona intestinalis, Halocynthia roretzi)</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="description" content="The ANISEED pipeline annotation forms the basis for the Gene Ontology classifications for Ciona intestinalis and Halocynthia roretzi genes. This page allows you to search for Ciona intestinalis or Halocynthia roretzi genes according to their associated Gene Ontology terms.">
<meta name="keywords" content="Ciona intestinalis, Halocynthia roretzi, ascidian database, ciona intestinalis database, ciona intestinalis gene, functional annotation, transcript model, Gene ontology, annotation, Tassy, Lemaire, Daian, Dauga, Sobral">
<meta name = "robots" content = "index, follow, all">
<META HTTP-EQUIV="Content-Language" CONTENT="EN">
<style type="text/css">
</style>
</head>

<?php
/*
    ANISEED, NISEED System and Database
    Copyright (C) 2007 Olivier Tassy, Fabrice Daian, Patrick Lemaire

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.

*/
include("connection.php");
include("frames_header.php");
?>


<div style="border-top:0px solid black;border-bottom:1px solid black;">
<font color="#D64242" size="3"><b>Gene ontology search</b></font><br>
</div>
<center>

<?php
            $genelist="";
			if(isset($_POST["genelist"]))
            	$genelist=$_POST["genelist"];

//print_r($genelist);

if (strlen($genelist)>0) $refine=true; else $refine=false;

            if(strlen($genelist)>0){
				
			      print "<center><H2><font color=\"#FF6600\">Refine subset mode</font> <a href=\"GO-search.php\" target=\"_self\"><img src=\"pictures/button-reset.jpg\" border=\"0\" align=\"middle\"></a> </H2></center>";
				
				}
?>

	        <table width="99%" border="0" cellspacing="0" cellpadding="0">

              <tr> 
			    <form name="formulaire" action="GO-result.php?" method="post" target="_blank">
		<td align="left">
		<? if ($refine) print '&nbsp;&nbsp;<input type="checkbox" name="notin" value="y"/>&nbsp;&nbsp;Not anotated with:</input>'; ?>
		</td>
		<td>&nbsp;</td>
		<td>&nbsp;</td>
		</tr>
		<tr>
		<td>&nbsp;</td>
		<td>&nbsp;</td>
		<td>&nbsp;</td>
		</tr>
		<tr>
                <td align="right"><font color="#456898" size="2"><b>GO id*:&nbsp;</b></font>
                  <input name="id" type="text" size="20"> 
				  <?php
				      print '<input name="genelist" type="hidden" value="'.$genelist.'">';
				  ?>
                </td>
                <td align="left">
				    <font color="#656565" size="-1">&nbsp;(e.g. GO:0030528)</font>
				    &nbsp;<input type="hidden" name="mode" value="id" >
				</td>
                <td align="left"><input name="submit" type="image" src="pictures/button-submit.jpg" onClick="submit"></td>
                </form>
			  </tr>
              <tr>
                <td><hr color="#505F70" size="1"></td>
                <td><hr color="#505F70" size="1"></td>
                <td><hr color="#505F70" size="1"></td>
              </tr>
              <tr> 
			    <form name="formulaire2" action="GO-result.php" method="post" target="_blank">
		<td align="left">
		<? if ($refine) print '&nbsp;&nbsp;<input type="checkbox" name="notin2" value="y"/>&nbsp;&nbsp;Not anotated with:</input>'; ?>
		</td>
		<td>&nbsp;</td>
		<td>&nbsp;</td>
		</tr>

                <td align="right"><font color="#456898" size="2"><b>GO term*:&nbsp; </font>
                  <input name="term" type="text" size="20"> 
				  <?php
				      print '<input name="genelist" type="hidden" value="'.$genelist.'">';
				      
				  ?>
                </td>
                <td align="left"> <font color="#656565" size="-1">&nbsp;(e.g. Transcription regulator activity) </font>
                  <input type="hidden" name="mode" value="term" >
				</td>
                <td align="left"> <input name="submit2" type="image" src="pictures/button-submit.jpg" onClick="submit"> 
                </td>
				</form>
              </tr>
              <tr> 
                <td>&nbsp;</td>
                <td>&nbsp;</td>
                <td height="30">&nbsp;</td>
              </tr>
            </table>


</center>
<br>
<strong>Note:</strong><br>
*To find proteins matching at least one term of the list, you can enter several terms or IDs by separating your entries with a space.




<?php
    include("frames_footer.php");
?>