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<title>ANISEED - Regulatory Region search (Ciona intestinalis or Halocynthia roretzi)</title>
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<meta name="description" content="This page allows to search Halocynthia roretzi or Ciona intestinalis regulatory regions.You can search regulatory regions by species, identifier, biological name, type of regulation, gene regulated, or publication.">
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    Copyright (C) 2007 Olivier Tassy, Fabrice Daian, Patrick Lemaire

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<div style="border-top:0px solid black;border-bottom:1px solid black;">
<font color="#D64242" size="3"><b>Find Regulatory Regions</b></font><br>
</div>
<br>
You can search regulatory regions by species, identifier, biological name, 
type of regulation, gene regulated, or publication. The gene must be indicated 
using its identifier. To obtain the identifier from a biological name you can use 
the <a href="molecule-search.php" target="_blank"> molecule search tool</a>.
<br>

<center>
<form name="formulaire" action="reg-region-search-results.php" method="POST" target="_blank">

    <table width="99%" border="0" cellspacing="0" cellpadding="0">

	<tr>
	<td>&nbsp;</td>
	<td>&nbsp;</td>
	<td>&nbsp;</td>
	<td>&nbsp;</td>
	<td>&nbsp;</td>
	</tr>

      <tr> 
        <td align="right"><font color="#456898" size="2"><b>Species&nbsp;</b></font></td>
        <td align="left"> <select name="species" size="1">
			
				<?php
						print "<option>-----ANY-----</option>";
						$requete="Select \"NAME\" from \"SPECIES\" order by \"NAME\"";
						$stmt = pg_query($c,$requete);
						while( $row=pg_fetch_array($stmt) ){
							$name=$row["NAME"];
							print "<option>$name</option>";
						}
				?>
			
          </select> </td>
	<td align="left">&nbsp;</td>
        <td align="left">&nbsp;</td>
        
      </tr>
      <tr>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
      </tr>
      <tr>
        <td align="right">&nbsp;<font color="#456898" size="2"><b>Name&nbsp;</b></font></td>
        <td align="left"><input name="name" type="text" size="50"><font color="#656565" size="-1"> &nbsp;&nbsp;<br> (Otx, p-Bra, REG00000141, etc...)</font> </td>
        <td>&nbsp;</td>
        <td align="right">&nbsp;</td>
      </tr>
	  
      <tr>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
      </tr>
	  	  
      <tr>
        <td align="right">&nbsp;<font color="#456898" size="2"><b>Type of Regulation&nbsp;</b></font></td>
        <td align="left"><select name="reg_type" size="1">
						<option selected="selected">-----ANY-----</option>
						<option>Basal Promoter</option>
						<option>Extended Promoter</option>
						<option>Enhancer</option>
						<option>Silencer</option>				
						<option>Insulator</option>
						<option>Complex Region</option>
						<option>No Activity</option>
						<option>Unknown Activity</option>		
					</select> 
		</td>
        <td>&nbsp;</td>
        <td align="right">&nbsp;</td>
      </tr>	  

      <tr>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
      </tr>
      <tr>
        <td align="right">&nbsp;<font color="#456898" size="2"><b>Regulated Gene:&nbsp;</b></font></td>
        <td align="left"><input name="target" type="text" size="30"><font color="#656565" size="-1"> 
				&nbsp;&nbsp;<br> (ci0100133709, ENSCINT00000018028, etc...)</font> </td>
        <td>&nbsp;</td>
        <td align="right">&nbsp;</td>
      </tr>
	  
      <tr>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
        <td>&nbsp;</td>
      </tr>
      <tr>
        <td align="right">&nbsp;<font color="#456898" size="2"><b>PUBMED ID:&nbsp;</b></font></td>
        <td align="left"><input name="pmid" type="text" size="20"><font color="#656565" size="-1"> 
				&nbsp;&nbsp;<br> (15736169)</font> </td>
        <td>&nbsp;</td>
        <td align="right">&nbsp;</td>
      </tr>

      <tr> 
        <td valign="top"><hr color="#505F70" size="1"></td>
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      </tr>	  
	  
	<tr>
        <td>&nbsp;</td>
	<td>&nbsp;</td>
	<td>&nbsp;</td>
        <td align="right"><input name="submit" type="image" src="pictures/button-submit.jpg" onClick="submit"> </td>
       </tr>


    </table>

</form>
</center>

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