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<title>ANISEED - Download 3D Virtual Embryo (Ciona intestinalis)</title>
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/*
    ANISEED, NISEED System and Database
    Copyright (C) 2007 Olivier Tassy, Fabrice Daian, Patrick Lemaire

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
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<font color="#D64242" size="3"><b>3D Virtual Embryo Download Section</b></font><br><br><br>

<font color="#456898" size="3"><b>How to reconstruct 3D embryo ?</b></font>
<br><br>
<font color="#656565" size="-1">
Manuscript in preparation... <br>
Programs that we used : <br>
- <strong><a href="Software/3DEmbryo_Reconstruction.zip">3DEmbryo_Reconstruction</a><br>

</font>
<br><br>

<font color="#456898" size="3"><b>How to install 3D Virtual Embryo on your computer ?</b></font>
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        <font color="#656565" size="-1">
        <OL TYPE="1"><LI>Install java (from the 1.4 release) If you are using Windows, the installation of java should start automatically.
                 But you can find the installer at <A HREF=http://java.sun.com/javase/downloads/widget/jdk6.jsp>http://java.sun.com/javase/downloads/widget/jdk6.jsp</A> (Choose to download
                 the Java SE corresponding to your operating system). Java is already installed on MacOSX. Make sure it is up to date.
                 </LI><BR>

             <LI>Install java3D (from the 1.3 release) you can find java3d for Windows & solaris & Linux at <A HREF=https://java3d.dev.java.net/binary-builds.html>
             https://java3d.dev.java.net/binary-builds.html.</A>
             For other platforms including MacOS 10.3, check the following url: 
             <A HREF=http://java.sun.com/products/java-media/3D/ports.html>
             http://java.sun.com/products/java-media/3D/ports.html</A>.
             Java3D is already installed with MacOs 10.4.</LI><BR>
             <LI>Download the 3D Virtual Embryo.
                          <OL TYPE="disc"><LI><a href="Software/3dve_Win20100310.zip" target="_self">Download 3D Virtual Embryo for Windows (version 2010-03-10) - Patched version / Embryos to very late 112c stage (Ciona intestinalis) </a></LI>
                                          <LI><a href="Software/3dve_Linux20100310.zip" target="_self">Download 3D Virtual Embryo for Linux (version 2010-03-10) - Patched version / Embryos to very late 112c stage (Ciona intestinalis) </a></LI>
                                          <LI><a href="Software/3dve_Mac20100310.zip" target="_self">Download 3D Virtual Embryo for MacOS (version 2010-03-10) - Patched version / Embryos to very late 112c stage (Ciona intestinalis)  <a></LI>
                          </OL>
             </LI>
         </OL>
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<font color="#456898" size="3"><b>Patch</b></font>
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<strong><font color="red">NEW PATCH (10/03/2010)</font></strong>
<br>
<br>
A major update has been done on the ANISEED Database and new embryos are available! Whole embryos are now avalaible from 2 cell-stage to very late 112 cell-stage for <em>Ciona intestinalis</em>, and from 64 cell-stage to mid 112-cell stage for <em>Phallusia mamillata</em>.<br>
If you have already downloaded the 3D Virtual Embryo, you have to replace the "embryo" directory in your 3DVirtual Embryo Directory by this one : <a href="Software/embryo.zip" target="_self">New embryo directory</a>
<br>
How to proceed ?
<br>
1) Download the "embryo.zip" <br>
2) Extract file in a new directory that you will name "embryo"<br>
3) Open your "3D Virtual embryo" directory <br>
4) Copy and Paste your embryo directory into this directory<br>
5) Your system says :The directory "embryo" already exists.  Would you like to replace it? => Respond <b>YES</b><br>
6) Start the 3D Virtual embryo !<br>
<br>
If you have any problem, you can send us a mail : <a href="mailto:aniseed@ibdm.univ-mrs.fr">aniseed@ibdm.univ-mrs.fr</a>

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<strong>Patch</strong> (2006-09-13) - Avoid 3D virtual embryo crashes when a big set of embryos are successively loaded. The current download version is patched.
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<font color="#456898" size="3"><b>Sources</b></font><br>
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<strong><a href="Software/3DVE_sources20060913.zip" target="_self">Download sources  </strong>(version 2006-09-13) - <em>Patched version</em><strong></a></strong>
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<!--
<font size="1">
<strong><em>Old versions</em></strong><br>
<strong><a href="Software/Windows_3dve.zip" target="_self">Download 3D Virtual Embryo for Windows </strong>
	<br>
<strong><a href="Software/Linux_3dve.zip" target="_self">Download the 3D Virtual Embryo for Linux  </strong>
<br>
<strong><a href="Software/MacOSX_3dve.zip" target="_self">Download the 3D Virtual Embryo for MacOS  </a></strong>
<br>
<br>
<strong><a href="Software/3DVE_sources.zip" target="_self">Download sources  </strong><br>
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<font color="#456898" size="3"><b>Quick tour - Screenshots </b></font>
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<strong><a href="download/aniseed-3D.mov" target="_self">Download Video of 3D Virtual Embryo's tour (19Mo)</a></strong>
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<table width="100%" border="0" cellspacing="10" cellpadding="0">
  
<tr>
  <td align="center"><font color="#000000" size="2"><b>Biometry</b></font></td>
  <td align="center"><font color="#000000" size="2"><b><strong>Virtual cell ablation</strong></td>
  </tr>
  
<tr>
    <td width="50%" align="center"><img src="pictures/3dbiometry.jpg" width="300" border="0"></td>
    <td width="50%" align="center"><img src="pictures/3dablation.jpg" width="300" border="0"></td>
  </tr>
 
 <tr>
<td align="center"><font color="#000000" size="2"><b>surface of contact</b></font></td>
<td align="center"><font color="#000000" size="2"><b>expression pattern</b></font></td>
  </tr> 
  <tr>
    <td align="center"><img src="pictures/3dcontact.jpg" width="300" border="0"></td>
    <td align="center"><img src="pictures/3dexp2.jpg" width="300" border="0"></td>
  </tr>
 
 
 <tr>
              <td align="center"><font color="#000000" size="2"><b>expression pattern</b></font></td>
	          <td align="center"><font color="#000000" size="2"><b>fate map</b></font></td>
  </tr>
 
  <tr>
    <td align="center"><img src="pictures/3dexp.jpg" width="300" border="0"></td>
    <td align="center"><img src="pictures/3dfate.jpg" width="300" border="0"></td>
  </tr>
 
 
 <tr>
              <td align="center"><font color="#000000" size="2"><b>lineage</b></font></td>
	          <td align="center"><font color="#000000" size="2"><b>slicer</b></font></td>
  </tr> 
  <tr>
    <td align="center"><img src="pictures/3dselect.jpg" width="300" border="0"></td>
    <td align="center"><img src="pictures/3dslicer.jpg" width="300" border="0"></td>
  </tr>
 
</table>




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          <font color="#999999" size="-1">right clic to dowload the file or left clic to see it 
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