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<font color="#D64242" size="3"><b>ANISEED Download Data Section</b></font>
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<br />
<br />

<!-- not functionnal yet -->
<!--<font color="#456898" size="2"><b>Database</b></font>-->
<!--<br />-->
<!--<font color="#000000" size="-1"> <a href="" onclick="not_yet_implemented();">PostgreSQL - whole database-->
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<font color="#456898" size="2"><b>Website</b></font>
<br />
<font color="#000000" size="-1"> Aniseed
Version 3.0, <a href="mailto:aniseed@ibdml.univ-mrs.fr?subject=request ANISEEDv3 website source code" target="_blank">request website source code</a>
<a
	href="http://crfb.univ-mrs.fr/aniseed/license.html">(GPL License)</a></font>
<br />

<br />
<br />
<table width="100%">
	<tr>
		<td width="33%" valign="top">
		<center><font color="#456898" size="2"><b>Genomic data</b></font></center>
		<br />

		<font color="#656565" size="2"><b>ESTs</b></font><br />
		<table width="100%">
			<tr>
				<td><img border="0" src="pictures/ncbi_logo_small.jpg"></td>
				<td align="left"><a
					href="http://www.ncbi.nlm.nih.gov/UniGene/lbrowse2.cgi?TAXID=7719"><font
					color="#000000" size="-1"><b> Download Ciona intestinalis ESTs</b></font></a></td>
			</tr>
		
		</table>
		<br />
		<font color="#656565" size="2"><b>Gene models</b></font><br />
		<table width="100%">

			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="50"></td>
				<td align="left"><a href="download/aniseedV3_GM.txt"><font
					color="#000000" size="-1">Download Aniseed V3 Gene model </font></a></td>
			</tr>
		</table>
		<br />
		<font color="#656565" size="2"><b>Transcript models</b></font><br />
		<table width="100%">
			<tr>
				<td><img border="0" src="pictures/jgi_logo.jpg" width="50"></td>
				<td align="left"><a
					href="ftp://ftp.jgi-psf.org/pub/JGI_data/Ciona/v1.0/ciona.mrna.fasta.gz"><font
					color="#000000" size="-1">Download JGI Gene model <em>(version 1.0)</em></font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/mini-ghost.jpg" width="60"></td>
				<td align="left"><a
					href="http://hoya.zool.kyoto-u.ac.jp/datas/grail2005.zip"><font
					color="#000000" size="-1">Download KYOTOGRAIL2005 Gene model</font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/mini-ghost.jpg" width="60"></td>
				<td align="left"><a
					href="http://hoya.zool.kyoto-u.ac.jp/datas/KHGene.zip"><font
					color="#000000" size="-1">Download KH Gene model</font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/e-bang.jpg" width="30"></td>
				<td align="left"><a
					href="ftp://ftp.ensembl.org/pub/current_fasta/ciona_intestinalis/cdna/Ciona_intestinalis.JGI2.56.cdna.all.fa.gz"><font
					color="#000000" size="-1">Download ENSEMBL Gene model</font></a></td>
			</tr>
	
			<tr>
				<td><img border="0" src="pictures/mini-MAGEST.jpg" width="50"></td>
				<td align="left"><a
					href="http://www.genome.ad.jp/magest/fasta/trans_MAGEST_5"><font
					color="#000000" size="-1">Download MAGEST translated cDNAs for
				Halocynthia roretzi </font></a></td>
			</tr>
		</table>
		<br />
		<font color="#656565" size="2"><b>ANISEED functionnal annotations of transcript models</b></font><br />
		<table width="100%">
			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="60"></td>
				<td align="left"><a href="download/JGI_annot.txt.zip"><font
					color="#000000" size="-1"> Download annotations of JGI version 1<font
					size="1"><b><em>(<?php print(formatBytes(filesize("download/JGI_annot.txt.zip"))); ?>)</em></b></font></font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="60"></td>
				<td align="left"><a href="download/KYOTOGRAIL_annot.txt.zip"><font
					color="#000000" size="-1"> Download annotations of KYOTOGRAIL
				<font size="1"><b><em>(<?php print(formatBytes(filesize("download/KYOTOGRAIL_annot.txt.zip"))); ?>)</em></b></font></font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="60"></td>
				<td align="left"><a href="download/KH_annot.txt.zip"><font
					color="#000000" size="-1"> Download annotations of KH
				<font size="1"><b><em>(<?php print(formatBytes(filesize("download/KH_annot.txt.zip"))); ?>)</em></b></font></font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="60"></td>
				<td align="left"><a href="download/ENSEMBL_annot.txt.zip"><font
					color="#000000" size="-1"> Download annotations of ENSEMBL
				<font size="1"><b><em>(<?php print(formatBytes(filesize("download/ENSEMBL_annot.txt.zip"))); ?>)</em></b></font></font></a></td>
			</tr>
		</table>



		</td>
		<td width="33%" valign="top" style="border-left: 1px solid black;">
		<center><font color="#456898" size="2"><b>Anatomy data</b></font></center>
		<br />
		<font color="#656565" size="2"><b>&nbsp;&nbsp;Ontologies</b></font><br />
		<table width="100%">
			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="60"></td>
				<td align="left"><a href="download/Ciona_intestinalis.OBO.zip"><font
					color="#000000" size="-1"> Download Ciona intestinalis anatomical
				ontologies in OBO format <font size="1"><b><em>(37 Ko)</em></b></font></font></a></td>
			</tr>
			<tr>
				<td><img border="0" src="pictures/mini-aniseed.jpg" width="60"></td>
				<td align="left"><a href="download/Halocynthia_roretzi.OBO.zip"><font
					color="#000000" size="-1"> Download Halocynthia roretzi anatomical
				ontologies in OBO format <font size="1"><b><em>(34 Ko)</em></b></font></font></a></td>
			</tr>
		</table>

		<br />
		<font color="#656565" size="2"><b>&nbsp;&nbsp;Embryo collection</b></font><br />
		<table width="100%">
			<tr>
				<td><img border="0" src="pictures/embryo.jpg" width="40"></td>
				<td align="left"><a href="embryo-collection.php"><font
					color="#000000" size="-1"> Download 3D embryos (obj file) and corresponding biometry
				data for the whole embryo collection (Ciona intestinalis, Phallusia mamillata and Boltenia villosa)
                                </font></a></td>
			</tr>
		</table>

		</td>

		<td width="33%" valign="top" style="border-left: 1px solid black;">
		<center><font color="#456898" size="2"><b>Expression data</b></font></center>
		<br />
		<font color="#656565" size="2"><b>&nbsp;&nbsp;In Situ data</b></font><br />
		<table width="100%">
			<tr>
				<td align="left"><a href="download/ish_Magest_Hr.zip"><font
					color="#000000" size="-1"> Download whole Halocynthia roretzi In
				Situ data in MISFISHIE compliant format</font><font size="-2"><b><em>(8,5
				Mo)</em></b></font></a></td>
			</tr>
			<tr>
				<td align="left"><a href="download/Ciona_insitus.zip"><font
					color="#000000" size="-1"> Download whole Ciona intestinalis In
				Situ data in MISFISHIE compliant format <font size="-2"><b><em>(169
				Mo)</em></b></font> </font></a></td>
			</tr>
			<tr>
				<td align="left">
					<br />
					<font color="#000000" size="-1">
						Informations on the MISFISHIE format
						<a href="http://aniseed-ibdm.univ-mrs.fr/exchange_format.php" target="_blank">here</a>
					</font>
				</td>
			</tr>
		</table>
		<br />
<!-- not functionnal yet -->
<!--		<font color="#656565" size="2"><b>&nbsp;&nbsp;Expression data</b></font><br />-->
<!--		<table width="100%">-->
<!--			<tr>-->
<!--				<td align="left"><a href="" onclick="not_yet_implemented();"><font color="#000000" size="-1">-->
<!--				Download DDD annotations</font></a></td>-->
<!--			</tr>-->
<!--		</table>-->
<!--		<br />-->
<!--		<br />-->
<!--		<font color="#656565" size="2"><b>&nbsp;&nbsp; Regulatory region</b></font><br />-->
<!--		<table width="100%">-->
<!--			<tr>-->
<!--				<td align="left"><a href="" onclick="not_yet_implemented();"><font color="#000000" size="-1">-->
<!--				Download regulatory regions</font></a></td>-->
<!--			</tr>-->
<!--		</table>-->
		</td>
	</tr>
</table>

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