K 25
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V 78
/Sting/!svn/ver/2749/trunk/archive/java/src/org/broadinstitute/sting/oldindels
END
AlignmentUtils.java
K 25
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V 98
/Sting/!svn/ver/2709/trunk/archive/java/src/org/broadinstitute/sting/oldindels/AlignmentUtils.java
END
PileBuilder.java
K 25
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V 95
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/PileBuilder.java
END
SymmetricMatrix.java
K 25
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V 99
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/SymmetricMatrix.java
END
KmerCodeIterator.java
K 25
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/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/KmerCodeIterator.java
END
RecordReceiver.java
K 25
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/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/RecordReceiver.java
END
Matrix.java
K 25
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V 90
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/Matrix.java
END
PassThroughWriter.java
K 25
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V 101
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/PassThroughWriter.java
END
DiscardingPileReceiver.java
K 25
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V 106
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/DiscardingPileReceiver.java
END
StrictlyUpperTriangularMatrix.java
K 25
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V 113
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/StrictlyUpperTriangularMatrix.java
END
IndexedSequence.java
K 25
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V 99
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/IndexedSequence.java
END
ConsensusSequence.java
K 25
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/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/ConsensusSequence.java
END
IndelRecordPileCollector.java
K 25
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V 108
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/IndelRecordPileCollector.java
END
IntervalComparator.java
K 25
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V 102
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/IntervalComparator.java
END
RecordPileReceiver.java
K 25
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V 102
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/RecordPileReceiver.java
END
CountedObjectComparatorAdapter.java
K 25
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V 114
/Sting/!svn/ver/2242/trunk/archive/java/src/org/broadinstitute/sting/oldindels/CountedObjectComparatorAdapter.java
END
ShowMSA.java
K 25
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V 91
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/ShowMSA.java
END
PairwiseAlignment.java
K 25
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V 101
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/PairwiseAlignment.java
END
SequencePile.java
K 25
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V 96
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/SequencePile.java
END
Interval.java
K 25
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V 92
/Sting/!svn/ver/2242/trunk/archive/java/src/org/broadinstitute/sting/oldindels/Interval.java
END
IndelInspectorMain.java
K 25
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/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/IndelInspectorMain.java
END
CountedObject.java
K 25
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V 97
/Sting/!svn/ver/2478/trunk/archive/java/src/org/broadinstitute/sting/oldindels/CountedObject.java
END
MultipleAlignment.java
K 25
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V 101
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/MultipleAlignment.java
END
Indel.java
K 25
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V 89
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/Indel.java
END
DiscardingReceiver.java
K 25
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V 102
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/DiscardingReceiver.java
END
MSAColumn.java
K 25
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V 93
/Sting/!svn/ver/2194/trunk/archive/java/src/org/broadinstitute/sting/oldindels/MSAColumn.java
END
IndelGenotyperWalker.java
K 25
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V 104
/Sting/!svn/ver/2749/trunk/archive/java/src/org/broadinstitute/sting/oldindels/IndelGenotyperWalker.java
END
SimpleInterval.java
K 25
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V 98
/Sting/!svn/ver/2242/trunk/archive/java/src/org/broadinstitute/sting/oldindels/SimpleInterval.java
END
