
README for Velvet Paper Supplement.

The following files are present in this directory
and the same information with the raw read information
is present at:

http://www.ebi.ac.uk/~zerbino/resub/gr/


BAC_contigs.fa.gz      - contigs resulting from tour bus on BAC
BAC_reference.fa.gz    - Reference BAC sequence

Strep_contigs.fa.gz    - contigs resulting from tour bus Strep
Strep_reference.fa.gz  - Reference Strep

paired_ends_contig.fa.gz  - paired ends contigs from SCSC on bacteria
paired_ends_reference.fa.gz - reference for paired end run

exonerateAlignments.gz - alignments of the paired end contigs to the reference by
  the exonerate ner method, which allows breaks (caused by the SCSC N's) in
  between the alignment blocks.

velvet_0.3.tgz         - Source code of velvet
velvet_0.3_superContigs.tgz - Source code of velvet with SCSC method


