001    package calhoun.analysis.crf.io;
002    
003    import java.io.IOException;
004    import java.util.Iterator;
005    import java.util.List;
006    import java.util.Map;
007    import java.util.Arrays;
008    
009    import org.apache.commons.logging.Log;
010    import org.apache.commons.logging.LogFactory;
011    
012    public class AllIntergenicHiddenStateReader implements TrainingSequenceIO {
013            private static final long serialVersionUID = 4413724139445660884L;
014            private static final Log log = LogFactory.getLog(GTFInputInterval13.class);
015            
016            public void readTrainingSequences(Object location, List<TrainingSequence<Map<String, Object>>> seqs) throws IOException {
017                    for(TrainingSequence<Map<String, Object>> seq : seqs) {
018                            int[] states = new int[seq.length()];
019                            Arrays.fill(states, 0);
020                            seq.setY(states);
021                    }
022                    
023            }
024            public void writeTrainingSequences(Object location, Iterator<int[]> data) throws IOException {
025                    
026            }
027    }