001    package calhoun.analysis.crf.features.supporting.phylogenetic;
002    
003    import calhoun.util.ColtUtil;
004    
005    public class NucleotideSubstitutionModelTest {
006    
007            public static void main(String[] args) {
008    
009                    NucleotideSubstitutionModel M = new Kimura80Model(new double[]{1.2,0.5});
010                    
011                    System.out.println("Transition matrix at time 0.1:");
012                    System.out.println(ColtUtil.format(M.transitionMatrix(0.1)));
013                    
014                    System.out.println("Transition matrix at time 1.0:");
015                    System.out.println(ColtUtil.format(M.transitionMatrix(1.0)));
016                    
017                    System.out.println("Transition matrix at time 10:");
018                    System.out.println(ColtUtil.format(M.transitionMatrix(10)));
019            }
020    }