Uses of Package
calhoun.util

Packages that use calhoun.util

calhoun.analysis.crf	the interface, main Conrad class, and solver for the Conrad engine.
calhoun.analysis.crf.io	handles input and output of gene calling formats
calhoun.analysis.crf.solver	training and inference algorithms used in the CRF engine
calhoun.analysis.crf.test
calhoun.analysis.crf.test.slow
calhoun.seq
calhoun.seq.test
calhoun.util

Classes in calhoun.util used by calhoun.analysis.crf

DenseBooleanMatrix2D

Classes in calhoun.util used by calhoun.analysis.crf.io

RangeMap
A rangeMap contains a set of intervals and maps each interval to a set of objects that exist in that interval.

Classes in calhoun.util used by calhoun.analysis.crf.solver

DenseIntMatrix2D

Classes in calhoun.util used by calhoun.analysis.crf.test

AbstractTestCase
Basic test case with file matching (XML and regular) added as well as improved logging for errors.

Classes in calhoun.util used by calhoun.analysis.crf.test.slow

AbstractTestCase
Basic test case with file matching (XML and regular) added as well as improved logging for errors.

Classes in calhoun.util used by calhoun.seq

ErrorException
Exception type for general errors.

Classes in calhoun.util used by calhoun.seq.test

AbstractTestCase
Basic test case with file matching (XML and regular) added as well as improved logging for errors.

Classes in calhoun.util used by calhoun.util

ConfigException
Exception type for system configuration exceptions.