Package calhoun.seq

Interface Summary

FastaSequence	Represents a generic sequence in a fasta file.
KmerHasher.CharacterHash

Class Summary

FastaIterator	This class implements iterator and allows a fasta file to be iterated through without having to read anything.
FastaIterator.ReaderSequence	A minimal sequence class that slurps its sequence in immediately.
FastaWriter	Used for writing fasta files.
KmerHasher	Class for computing kmer hashes.
QualityIterator
RepeatedSubsequence
SimpleFastaSequence