Uses of Interface
calhoun.seq.FastaSequence

Packages that use FastaSequence

calhoun.seq

Uses of FastaSequence in calhoun.seq

Classes in calhoun.seq that implement FastaSequence

static class	FastaIterator.ReaderSequence A minimal sequence class that slurps its sequence in immediately.
class	SimpleFastaSequence

Methods in calhoun.seq that return FastaSequence

FastaSequence	FastaIterator.next()
FastaSequence	QualityIterator.nextQuality() Returns the next set of qualities in this file.

Methods in calhoun.seq with parameters of type FastaSequence

void	FastaWriter.writeSeq(FastaSequence seq) Writes a sequence to the file, which may have been previously read from a different file.