calhoun.analysis.crf.test
Class ReferenceBasePredictorTest

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          calhoun.util.AbstractTestCase
              calhoun.analysis.crf.test.ReferenceBasePredictorTest

All Implemented Interfaces:

junit.framework.Test

public class ReferenceBasePredictorTest
extends AbstractTestCase

Tests that CRF is working with valid probabilities - the sum of all possible labelings is 1. Test that the code to walk through only the valid paths works correctly. Uses a two state model that disallows transitions to self. 010101... or 101010... are the only allowed paths.

Constructor Summary

ReferenceBasePredictorTest()

Method Summary

void	testLogProbLookupEasy()
void	testLogProbLookupHard()
void	testReferenceBasePredictor()

Methods inherited from class calhoun.util.AbstractTestCase

assertArrayEquals, assertArrayEquals, assertArrayEquals, assertArrayEquals, assertBeginsWith, assertEndsWith, assertEquals, assertFilesMatch, assertFlatFileRecordsMatch, assertStringEquals, assertStringEquals, assertXmlFilesMatch, runBare

Methods inherited from class junit.framework.TestCase

countTestCases, getName, run, run, setName, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ReferenceBasePredictorTest

public ReferenceBasePredictorTest()

Method Detail

testLogProbLookupEasy

public void testLogProbLookupEasy()
                           throws java.lang.Exception

Throws:

java.lang.Exception

testLogProbLookupHard

public void testLogProbLookupHard()
                           throws java.lang.Exception

Throws:

java.lang.Exception

testReferenceBasePredictor

public void testReferenceBasePredictor()
                                throws java.lang.Exception

Throws:

java.lang.Exception