GeneConstraintsInterval13Test (Conrad javadoc)

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calhoun.analysis.crf.test
Class GeneConstraintsInterval13Test

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          calhoun.util.AbstractTestCase
              calhoun.analysis.crf.test.GeneConstraintsInterval13Test

All Implemented Interfaces:: junit.framework.Test

public class GeneConstraintsInterval13Test
extends AbstractTestCase
extends AbstractTestCase

Tests that CRF is working with valid probabilities - the sum of all possible labelings is 1. Test that the code to walk through only the valid paths works correctly. Uses a two state model that disallows transitions to self. 010101... or 101010... are the only allowed paths.

Constructor Summary
`GeneConstraintsInterval13Test()`

Method Summary
`void`	`testGeneConstraintsEvaluation()`
`void`	`testGeneConstraintsTraining()`

Methods inherited from class calhoun.util.AbstractTestCase
`assertArrayEquals, assertArrayEquals, assertArrayEquals, assertArrayEquals, assertBeginsWith, assertEndsWith, assertEquals, assertFilesMatch, assertFlatFileRecordsMatch, assertStringEquals, assertStringEquals, assertXmlFilesMatch, runBare`

Methods inherited from class junit.framework.TestCase
`countTestCases, getName, run, run, setName, toString`

Methods inherited from class junit.framework.Assert
`assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail`

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Constructor Detail

GeneConstraintsInterval13Test

public GeneConstraintsInterval13Test()

Method Detail

testGeneConstraintsTraining

public void testGeneConstraintsTraining()
                                 throws java.lang.Exception

Throws:: java.lang.Exception

testGeneConstraintsEvaluation

public void testGeneConstraintsEvaluation()
                                   throws java.lang.Exception

Throws:: java.lang.Exception