calhoun.analysis.crf.solver
Class CacheProcessor.SolverSetup

java.lang.Object
  calhoun.analysis.crf.solver.CacheProcessor.SolverSetup

Enclosing interface:

CacheProcessor

public static class CacheProcessor.SolverSetup
extends java.lang.Object

Field Summary

byte[][]	exitTransitions
int	longestSeq
short	maxLookback
short[]	maxStateLengths
int	nFeatures
int	nPotentials
int	nSeqs
int	nStates
int	nTransitions
short[]	orderedPotentials
int[]	selfTransitions
int[]	seqOffsets
CacheProcessor.StatePotentials[]	statesWithLookback
CacheProcessor.StatePotentials[]	statesWithoutLookback
int	totalPositions
short[]	transitionFrom
DenseIntMatrix2D	transitionIndex
short[]	transitionTo

Constructor Summary

CacheProcessor.SolverSetup()

Method Summary

void	initStatesWithLookback(short[] maxStateLengths) Creates an array of StatePotential objects given the maximum lookback for each state.
void	setup(ModelManager fm, java.util.List<? extends TrainingSequence<?>> data, boolean allPaths, short[] maxStateLengths2, boolean ignoreSemiMarkovSelfTransitions)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nFeatures

public int nFeatures

nStates

public int nStates

nPotentials

public int nPotentials

nTransitions

public int nTransitions

seqOffsets

public int[] seqOffsets

nSeqs

public int nSeqs

longestSeq

public int longestSeq

transitionFrom

public short[] transitionFrom

transitionTo

public short[] transitionTo

orderedPotentials

public short[] orderedPotentials

totalPositions

public int totalPositions

selfTransitions

public int[] selfTransitions

transitionIndex

public DenseIntMatrix2D transitionIndex

exitTransitions

public byte[][] exitTransitions

maxStateLengths

public short[] maxStateLengths

maxLookback

public short maxLookback

statesWithLookback

public CacheProcessor.StatePotentials[] statesWithLookback

statesWithoutLookback

public CacheProcessor.StatePotentials[] statesWithoutLookback

Constructor Detail

CacheProcessor.SolverSetup

public CacheProcessor.SolverSetup()

Method Detail

setup

public void setup(ModelManager fm,
                  java.util.List<? extends TrainingSequence<?>> data,
                  boolean allPaths,
                  short[] maxStateLengths2,
                  boolean ignoreSemiMarkovSelfTransitions)

initStatesWithLookback

public void initStatesWithLookback(short[] maxStateLengths)

Creates an array of StatePotential objects given the maximum lookback for each state.