calhoun.analysis.crf.io

Interfaces  FilenameMapper InputComponentIO InputHandler InputSequence InterleavedInputComponent OutputHandler TrainingSequenceIO

Classes  AlignmentTree AllIntergenicHiddenStateReader BooleanInput CompositeInput CompositeInput.InputComponent CompositeInput.LegacyInputHandler ExtensionMapper FastaAlignmentInput FastaInput GTFInputInterval13 GTFInputInterval29 InputHandlerBase InputHandlerDirectory InputHandlerFile InputHandlerInterleaved InputSequenceBoolean InputSequenceCharacter InputSequenceComposite InputSequenceInt InputSequenceObject InterleavedInputComponentBase Interval21HiddenSequenceTranslator IntervalInput IntervalInputSequence IntervalInputSequence.IntervalRangeMapValue IntInput IntInputInterval29 IteratorAdapterInputComponent IteratorAdapterTrainingSequenceInput MultipleAlignmentInput MultipleAlignmentInputSequence NameInput NameInputSequence OutputHandlerComposite OutputHandlerGeneCallPredict OutputHandlerGeneCallPredict.Results OutputHandlerGeneCallStats OutputHandlerGeneCallStats.Results OutputHandlerGeneCallStatsInterval29 OutputHandlerWriter SequenceConverter StringInput TrainingSequence