Uses of Interface
calhoun.analysis.crf.io.TrainingSequenceIO

Packages that use TrainingSequenceIO

calhoun.analysis.crf.io

handles input and output of gene calling formats

Uses of TrainingSequenceIO in calhoun.analysis.crf.io

Classes in calhoun.analysis.crf.io that implement TrainingSequenceIO

class	AllIntergenicHiddenStateReader
class	GTFInputInterval13
class	GTFInputInterval29
class	Interval21HiddenSequenceTranslator
class	IntInput reads in an input consisting of a list of ints that correspond to binary values.
class	IntInputInterval29

Methods in calhoun.analysis.crf.io that return TrainingSequenceIO

TrainingSequenceIO	CompositeInput.getHiddenSequenceReader() Deprecated.
TrainingSequenceIO	InputHandlerFile.getHiddenStateReader() gets the reader used to read in results for training data.
TrainingSequenceIO	InputHandlerDirectory.getHiddenStateReader() gets the reader used to read in results for training data.
TrainingSequenceIO	OutputHandlerWriter.getResultHandler() gets the result handler which will be used to handle the output sequence

Methods in calhoun.analysis.crf.io with parameters of type TrainingSequenceIO

void	CompositeInput.setHiddenSequenceReader(TrainingSequenceIO hiddenSequenceReader) Deprecated.
void	InputHandlerFile.setHiddenStateReader(TrainingSequenceIO hiddenStateReader) sets the reader used to get hidden sequences.
void	InputHandlerDirectory.setHiddenStateReader(TrainingSequenceIO hiddenStateReader) sets the reader used to get hidden sequences.
void	OutputHandlerWriter.setResultHandler(TrainingSequenceIO resultHandler) sets the result handler which will be used to handle the output sequence