Uses of Interface
calhoun.analysis.crf.io.OutputHandler

Packages that use OutputHandler

calhoun.analysis.crf	the interface, main Conrad class, and solver for the Conrad engine.
calhoun.analysis.crf.io	handles input and output of gene calling formats

Uses of OutputHandler in calhoun.analysis.crf

Methods in calhoun.analysis.crf that return OutputHandler

OutputHandler

Conrad.getOutputHandler() gets the configured output handler.

Methods in calhoun.analysis.crf with parameters of type OutputHandler

void	Conrad.setOutputHandler(OutputHandler outputHandler) sets the configured output handler.

Uses of OutputHandler in calhoun.analysis.crf.io

Classes in calhoun.analysis.crf.io that implement OutputHandler

class	OutputHandlerComposite an output handler that allows multiple output handlers to be configured.
class	OutputHandlerGeneCallPredict A legacy output handler that computes basic stats, gene calling statsm and then writes out a GTF file.
class	OutputHandlerGeneCallStats A legacy output handler that computes basic stats, gene calling statsm and then writes out a GTF file.
class	OutputHandlerGeneCallStatsInterval29
class	OutputHandlerWriter writes output to a file using a TrainingSequenceIO.

Methods in calhoun.analysis.crf.io that return types with arguments of type OutputHandler

java.util.List<OutputHandler>

OutputHandlerComposite.getHandlers() retursn the configured list of output handler.

Method parameters in calhoun.analysis.crf.io with type arguments of type OutputHandler

void	OutputHandlerComposite.setHandlers(java.util.List<OutputHandler> handlers) sets the list of output handlers