Uses of Interface
calhoun.analysis.crf.io.InterleavedInputComponent

Packages that use InterleavedInputComponent

calhoun.analysis.crf.io

handles input and output of gene calling formats

Uses of InterleavedInputComponent in calhoun.analysis.crf.io

Classes in calhoun.analysis.crf.io that implement InterleavedInputComponent

class	BooleanInput reads in an input consisting of a string of 1's and 0's that correspond to binary values.
class	InterleavedInputComponentBase base class for InterleavedInputComponents.
class	Interval21HiddenSequenceTranslator
class	IntervalInput an input component used to read in values that are similar for long intervals.
class	IntInput reads in an input consisting of a list of ints that correspond to binary values.
class	IntInputInterval29
class	MultipleAlignmentInput an input component that reads in multiple alignment sequences.
class	NameInput an input component that reads in a name for each sequence.
class	StringInput reads in an input consisting of a string.

Methods in calhoun.analysis.crf.io that return types with arguments of type InterleavedInputComponent

java.util.List<InterleavedInputComponent>

InputHandlerInterleaved.getComponents() gets the current set of input components configured for this input handler.

Method parameters in calhoun.analysis.crf.io with type arguments of type InterleavedInputComponent

void	InputHandlerInterleaved.setComponents(java.util.List<InterleavedInputComponent> components) sets the current set of input components configured for this input handler.

Constructors in calhoun.analysis.crf.io with parameters of type InterleavedInputComponent

InputHandlerInterleaved(InterleavedInputComponent base)
creates a new input handler, containing a single InterleavedInputComponent

InputHandlerInterleaved(InterleavedInputComponent base, boolean locationIsLiteral)
creates a new input handler, containing a single InterleavedInputComponent