Uses of Interface
calhoun.analysis.crf.io.FilenameMapper

Packages that use FilenameMapper

calhoun.analysis.crf.io

handles input and output of gene calling formats

Uses of FilenameMapper in calhoun.analysis.crf.io

Classes in calhoun.analysis.crf.io that implement FilenameMapper

class

ExtensionMapper an implementation of FilenameMapper that changes file extensions or add a new file extension onto the source file.

Methods in calhoun.analysis.crf.io that return FilenameMapper

FilenameMapper	OutputHandlerWriter.getFilenameMapper() gets the mapper which will be used to generate the output filename based on the output location.
FilenameMapper	InputHandlerFile.getMapper() the mapper used to generate the name of the hidden sequence file from the input sequence file.

Methods in calhoun.analysis.crf.io with parameters of type FilenameMapper

void	OutputHandlerWriter.setFilenameMapper(FilenameMapper filenameMapper) sets the mapper which will be used to generate the output filename based on the output location.
void	InputHandlerFile.setMapper(FilenameMapper mapper) the mapper used to generate the name of the hidden sequence file from the input sequence file.