Uses of Class
calhoun.analysis.crf.io.CompositeInput

Packages that use CompositeInput

calhoun.analysis.crf.features.interval13	mdoel definition and setup for the interval13 model
calhoun.analysis.crf.features.interval29
calhoun.analysis.crf.features.tricycle13	basic features and model for the tricycle13 gene calling model

Uses of CompositeInput in calhoun.analysis.crf.features.interval13

Method parameters in calhoun.analysis.crf.features.interval13 with type arguments of type CompositeInput

void	ESTInterval13.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int prevState, int state, FeatureList result)
void	ESTInterval13.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	BlastInterval13.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	ESTInterval13.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)
void	BlastInterval13.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)

Uses of CompositeInput in calhoun.analysis.crf.features.interval29

Method parameters in calhoun.analysis.crf.features.interval29 with type arguments of type CompositeInput

void	ESTInterval29.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int prevState, int state, FeatureList result)
void	ESTInterval29.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	ESTInterval29.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)

Uses of CompositeInput in calhoun.analysis.crf.features.tricycle13

Method parameters in calhoun.analysis.crf.features.tricycle13 with type arguments of type CompositeInput

void	PWM_evolution.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int previousState, int state, FeatureList result)
void	ESTEdge.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int prevState, int state, FeatureList result)
void	PfamPhase.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	PfamGenic.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	ESTIntron.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	ESTExon.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	ESTEdge.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)
void	PWM_evolution.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)
void	PfamPhase.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)
void	PfamGenic.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)
void	ESTIntron.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)
void	ESTExon.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)
void	ESTEdge.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)