calhoun.analysis.crf.io
Interface TrainingSequenceIO

All Superinterfaces:

java.io.Serializable

All Known Implementing Classes:

AllIntergenicHiddenStateReader, GTFInputInterval13, GTFInputInterval29, Interval21HiddenSequenceTranslator, IntInput, IntInputInterval29

public interface TrainingSequenceIO
extends java.io.Serializable

Interface for reading a training sequence from the specified location.

Method Summary

void	readTrainingSequences(java.lang.Object location, java.util.List<TrainingSequence<java.util.Map<java.lang.String,java.lang.Object>>> seqs) reads training sequences from the specified location.
void	writeTrainingSequences(java.lang.Object location, java.util.Iterator<int[]> data) writes training sequences to the specified location.

Method Detail

readTrainingSequences

void readTrainingSequences(java.lang.Object location,
                           java.util.List<TrainingSequence<java.util.Map<java.lang.String,java.lang.Object>>> seqs)
                           throws java.io.IOException

reads training sequences from the specified location.

Parameters:

location - location of the training sequences. Meaning is implementation dependent.

seqs - a list of the input sequences to which hidden sequences should be added. Each hidden sequence is an array of integers containing hidden state indices.

Throws:

java.io.IOException

writeTrainingSequences

void writeTrainingSequences(java.lang.Object location,
                            java.util.Iterator<int[]> data)
                            throws java.io.IOException

writes training sequences to the specified location.

Parameters:

location - location of the training sequences. Meaning is implementation dependent.

data - iterator over the hidden states to write.

Throws:

java.io.IOException