calhoun.analysis.crf.io
Class OutputHandlerGeneCallStatsInterval29

java.lang.Object
  calhoun.analysis.crf.io.OutputHandlerGeneCallStats
      calhoun.analysis.crf.io.OutputHandlerGeneCallStatsInterval29

All Implemented Interfaces:

OutputHandler, java.io.Serializable

public class OutputHandlerGeneCallStatsInterval29
extends OutputHandlerGeneCallStats

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class calhoun.analysis.crf.io.OutputHandlerGeneCallStats

OutputHandlerGeneCallStats.Results

Constructor Summary

OutputHandlerGeneCallStatsInterval29()

Method Summary

void	writeTestOutput(InputSequence<?> sequence, int[] truePath, int[] hiddenStates) Writes out a set of hidden states compared with a known true path.

Methods inherited from class calhoun.analysis.crf.io.OutputHandlerGeneCallStats

calcResultIncrement, getAccuracy, getInputHandler, getLabeled, getManager, getViterbiScores, isWriteTrainingData, loglikelihoodIncrement, outputComplete, setInputHandler, setManager, setOutputLocation, setWriteTrainingData, toString, writeGTF, writeOutput

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

OutputHandlerGeneCallStatsInterval29

public OutputHandlerGeneCallStatsInterval29()

Method Detail

writeTestOutput

public void writeTestOutput(InputSequence<?> sequence,
                            int[] truePath,
                            int[] hiddenStates)
                     throws java.io.IOException

Description copied from interface: OutputHandler

Writes out a set of hidden states compared with a known true path. The location will have been specified previously with OutputHandler.setOutputLocation(java.lang.String)

Specified by:

writeTestOutput in interface OutputHandler

Overrides:

writeTestOutput in class OutputHandlerGeneCallStats

Parameters:

sequence - the input sequence on which predictions were made

truePath - an array of hidden states representing the true path.

hiddenStates - an array of state indices for the predicted hidden states.

Throws:

java.io.IOException