calhoun.analysis.crf.io
Class IntervalInputSequence.IntervalPosition

java.lang.Object
  calhoun.analysis.crf.io.IntervalInputSequence.IntervalPosition

Enclosing class:

IntervalInputSequence

public class IntervalInputSequence.IntervalPosition
extends java.lang.Object

provides interval based queries for a particular position in the input sequence for an IntervalInputSequence.

Constructor Summary

IntervalInputSequence.IntervalPosition(int pos)
creates an IntervalPosition object for this sequence at this position.

Method Summary

boolean	queryMinus() returns true if an input interval exists on the negative strand at this position.
boolean	queryPlus() returns true if an input interval exists on the positive strand at this position.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IntervalInputSequence.IntervalPosition

public IntervalInputSequence.IntervalPosition(int pos)

creates an IntervalPosition object for this sequence at this position.

Parameters:

pos - the position on the input sequence

Method Detail

queryPlus

public boolean queryPlus()

returns true if an input interval exists on the positive strand at this position.

queryMinus

public boolean queryMinus()

returns true if an input interval exists on the negative strand at this position.