calhoun.analysis.crf.io
Interface InterleavedInputComponent

All Superinterfaces:

InputComponentIO, java.io.Serializable

All Known Implementing Classes:

BooleanInput, InterleavedInputComponentBase, Interval21HiddenSequenceTranslator, IntervalInput, IntInput, IntInputInterval29, MultipleAlignmentInput, NameInput, StringInput

public interface InterleavedInputComponent
extends InputComponentIO

an input component that can be used with the InputHandlerInterleaved. This is a regular input component that also has input and output methods that take a BufferedReader to use when reading data from the input file.

Method Summary

boolean	read(java.io.BufferedReader r, java.util.Map<java.lang.String,InputSequence<?>> output) Read the contents of the sequence in from a reader.
void	write(java.io.Writer w, java.util.Map<java.lang.String,? extends InputSequence<?>> data) Output this sequence to the given writer.

Methods inherited from interface calhoun.analysis.crf.io.InputComponentIO

getComponentNames, readInputSequences, writeInputSequences

Method Detail

read

boolean read(java.io.BufferedReader r,
             java.util.Map<java.lang.String,InputSequence<?>> output)
             throws java.io.IOException

Read the contents of the sequence in from a reader. Return false if the end of file was reached.

Parameters:

r - the buffered reader from which the next sequence should be read.

output - a map to which new components for this input sequence should be added.

Returns:

true if a sequence was read in and the map was populated. false if the end of the sequence was reached.

Throws:

java.io.IOException

write

void write(java.io.Writer w,
           java.util.Map<java.lang.String,? extends InputSequence<?>> data)
           throws java.io.IOException

Output this sequence to the given writer.

Parameters:

w - a writer to which this sequence should be written

data - a map containing the data for the sequence to be written

Throws:

java.io.IOException