calhoun.analysis.crf.io
Class AllIntergenicHiddenStateReader

java.lang.Object
  calhoun.analysis.crf.io.AllIntergenicHiddenStateReader

All Implemented Interfaces:

TrainingSequenceIO, java.io.Serializable

public class AllIntergenicHiddenStateReader
extends java.lang.Object
implements TrainingSequenceIO

See Also:

Serialized Form

Constructor Summary

AllIntergenicHiddenStateReader()

Method Summary

void	readTrainingSequences(java.lang.Object location, java.util.List<TrainingSequence<java.util.Map<java.lang.String,java.lang.Object>>> seqs) reads training sequences from the specified location.
void	writeTrainingSequences(java.lang.Object location, java.util.Iterator<int[]> data) writes training sequences to the specified location.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AllIntergenicHiddenStateReader

public AllIntergenicHiddenStateReader()

Method Detail

readTrainingSequences

public void readTrainingSequences(java.lang.Object location,
                                  java.util.List<TrainingSequence<java.util.Map<java.lang.String,java.lang.Object>>> seqs)
                           throws java.io.IOException

Description copied from interface: TrainingSequenceIO

reads training sequences from the specified location.

Specified by:

readTrainingSequences in interface TrainingSequenceIO

Parameters:

location - location of the training sequences. Meaning is implementation dependent.

seqs - a list of the input sequences to which hidden sequences should be added. Each hidden sequence is an array of integers containing hidden state indices.

Throws:

java.io.IOException

writeTrainingSequences

public void writeTrainingSequences(java.lang.Object location,
                                   java.util.Iterator<int[]> data)
                            throws java.io.IOException

Description copied from interface: TrainingSequenceIO

writes training sequences to the specified location.

Specified by:

writeTrainingSequences in interface TrainingSequenceIO

Parameters:

location - location of the training sequences. Meaning is implementation dependent.

data - iterator over the hidden states to write.

Throws:

java.io.IOException