calhoun.analysis.crf.features.supporting.phylogenetic
Class PhylogeneticTreeFelsensteinOrder

java.lang.Object
  calhoun.analysis.crf.features.supporting.phylogenetic.PhylogeneticTreeFelsensteinOrder

All Implemented Interfaces:

java.io.Serializable

public class PhylogeneticTreeFelsensteinOrder
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Constructor Summary

PhylogeneticTreeFelsensteinOrder()

PhylogeneticTreeFelsensteinOrder(int[] ileft, int[] iright, double[] bleft, double[] bright)

Method Summary

double[]	getbleft()
double[]	getbright()
int[]	getileft()
int[]	getiright()
int	numNodes()
int	numSpecies()
int	numSteps()
void	summarize()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhylogeneticTreeFelsensteinOrder

public PhylogeneticTreeFelsensteinOrder()

PhylogeneticTreeFelsensteinOrder

public PhylogeneticTreeFelsensteinOrder(int[] ileft,
                                        int[] iright,
                                        double[] bleft,
                                        double[] bright)

Method Detail

summarize

public void summarize()
               throws java.io.IOException

Throws:

java.io.IOException

numSpecies

public int numSpecies()

numSteps

public int numSteps()

numNodes

public int numNodes()

getileft

public int[] getileft()

getiright

public int[] getiright()

getbleft

public double[] getbleft()

getbright

public double[] getbright()