calhoun.analysis.crf.features.supporting
Class PWMLookup

java.lang.Object
  calhoun.analysis.crf.features.supporting.PWMLookup

All Implemented Interfaces:

java.io.Serializable

public class PWMLookup
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Constructor Summary

PWMLookup(int lookLeft, int lookRight, double pseudoCount)

Method Summary

void	completeCounts()
void	increment(InputSequence<? extends java.lang.Character> seq, int pos, boolean isPlus)
double	lookup(InputSequence<? extends java.lang.Character> seq, int pos, boolean isPlus)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PWMLookup

public PWMLookup(int lookLeft,
                 int lookRight,
                 double pseudoCount)

Method Detail

increment

public void increment(InputSequence<? extends java.lang.Character> seq,
                      int pos,
                      boolean isPlus)

completeCounts

public void completeCounts()

lookup

public double lookup(InputSequence<? extends java.lang.Character> seq,
                     int pos,
                     boolean isPlus)