Hierarchy For Package calhoun.analysis.crf.features.interval29

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • calhoun.analysis.crf.AbstractFeatureManager<InputType> (implements calhoun.analysis.crf.FeatureManager<InputType>)
    • calhoun.analysis.crf.CompositeFeatureManager (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerEdgeExplicitLength<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>, calhoun.analysis.crf.FeatureManagerNodeExplicitLength<InputType>)
      • calhoun.analysis.crf.BeanModel (implements calhoun.analysis.crf.ModelManager)
        • calhoun.analysis.crf.features.interval29.Interval29Model
    • calhoun.analysis.crf.features.interval29.ESTInterval29 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>)
    • calhoun.analysis.crf.features.interval29.FootprintsInterval29 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    • calhoun.analysis.crf.features.interval29.GapFeaturesInterval29 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    • calhoun.analysis.crf.features.interval29.GeneConstraintsInterval29 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>)
    • calhoun.analysis.crf.features.interval29.PWMInterval29 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
    • calhoun.analysis.crf.features.interval29.ReferenceBasePredictorInterval29Base
      • calhoun.analysis.crf.features.interval29.ReferenceBasePredictorInterval29 (implements calhoun.analysis.crf.FeatureManagerNodeBoundaries<InputType>)
      • calhoun.analysis.crf.features.interval29.ReferenceBasePredictorNodeOnlyInterval29 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
      • calhoun.analysis.crf.features.interval29.ReferenceBasePredictorZeroPadInterval29 (implements calhoun.analysis.crf.FeatureManagerNodeBoundaries<InputType>)
    • calhoun.analysis.crf.features.interval29.StateTransitionsInterval29 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
  • calhoun.analysis.crf.features.interval29.Interval29Tools
  • calhoun.analysis.crf.features.interval29.StateLengthLogprobInterval29 (implements calhoun.analysis.crf.FeatureManagerNodeExplicitLength<InputType>)