Package calhoun.analysis.crf.features.interval29

Class Summary
ESTInterval29  
FootprintsInterval29  
GapFeaturesInterval29  
GeneConstraintsInterval29 Implements basic constraints on gene calls. 1) Intergenic - start must occur at ATG 2) Splice sites must be canonical GT/AG or GC/AG 3) Exon-stop must be followed by a start codon
Interval29Model  
Interval29Tools  
PWMInterval29  
ReferenceBasePredictorInterval29  
ReferenceBasePredictorInterval29Base  
ReferenceBasePredictorNodeOnlyInterval29  
ReferenceBasePredictorZeroPadInterval29  
StateLengthLogprobInterval29  
StateTransitionsInterval29