calhoun.analysis.crf.features.interval13
Class Interval13Model

java.lang.Object
  calhoun.analysis.crf.AbstractFeatureManager
      calhoun.analysis.crf.CompositeFeatureManager
          calhoun.analysis.crf.BeanModel
              calhoun.analysis.crf.features.interval13.Interval13Model

All Implemented Interfaces:

FeatureManager, FeatureManagerEdge, FeatureManagerEdgeExplicitLength, FeatureManagerNode, FeatureManagerNodeExplicitLength, ModelManager, java.io.Serializable

public class Interval13Model
extends BeanModel

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class calhoun.analysis.crf.BeanModel

BeanModel.Edge, BeanModel.Node

Constructor Summary

Interval13Model()

Method Summary

static int	getPadExon3prime()
static int	getPadExon5prime()
static int	getPadIntergenic()
static int	getPadIntron3prime()
static int	getPadIntron5prime()
void	setNarrowBoundaries(boolean narrowBoundaries)

Methods inherited from class calhoun.analysis.crf.BeanModel

getLegalTransitions, getNumStates, getStateIndex, getStateName, setEdges, setNodes

Methods inherited from class calhoun.analysis.crf.CompositeFeatureManager

addFeatureManager, addFeatureManager, evaluateEdge, evaluateEdgeLength, evaluateNode, evaluateNodeLength, getCacheStrategy, getComponentFeatures, getFeatureName, getFeatureOffset, getNumFeatures, setComponentFeatures, train

Methods inherited from class calhoun.analysis.crf.AbstractFeatureManager

getInputComponent, setInputComponent

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface calhoun.analysis.crf.FeatureManagerEdge

evaluateEdge

Methods inherited from interface calhoun.analysis.crf.FeatureManager

getCacheStrategy, getFeatureName, getInputComponent, getNumFeatures, setInputComponent, train

Methods inherited from interface calhoun.analysis.crf.FeatureManagerNode

evaluateNode

Methods inherited from interface calhoun.analysis.crf.FeatureManager

getCacheStrategy, getFeatureName, getInputComponent, getNumFeatures, setInputComponent, train

Methods inherited from interface calhoun.analysis.crf.FeatureManagerEdgeExplicitLength

evaluateEdgeLength

Methods inherited from interface calhoun.analysis.crf.FeatureManager

getCacheStrategy, getFeatureName, getInputComponent, getNumFeatures, setInputComponent, train

Methods inherited from interface calhoun.analysis.crf.FeatureManagerNodeExplicitLength

evaluateNodeLength

Methods inherited from interface calhoun.analysis.crf.FeatureManager

getCacheStrategy, getFeatureName, getInputComponent, getNumFeatures, setInputComponent, train

Constructor Detail

Interval13Model

public Interval13Model()

Method Detail

setNarrowBoundaries

public void setNarrowBoundaries(boolean narrowBoundaries)

getPadExon5prime

public static int getPadExon5prime()

getPadExon3prime

public static int getPadExon3prime()

getPadIntron5prime

public static int getPadIntron5prime()

getPadIntron3prime

public static int getPadIntron3prime()

getPadIntergenic

public static int getPadIntergenic()