Uses of Interface
calhoun.analysis.crf.LocalPathSimilarityScore

Packages that use LocalPathSimilarityScore

calhoun.analysis.crf.scoring	local similarity functions used in gene calling models
calhoun.analysis.crf.solver.semimarkov

Uses of LocalPathSimilarityScore in calhoun.analysis.crf.scoring

Classes in calhoun.analysis.crf.scoring that implement LocalPathSimilarityScore

class	SimScoreMaxStateAgreement
class	SimScoreMinCodingMiscallsSV13
class	SimScoreMinExonBoundaryMiscallsSV13
class	SimScoreStateAndExonBoundariesInt13

Uses of LocalPathSimilarityScore in calhoun.analysis.crf.solver.semimarkov

Methods in calhoun.analysis.crf.solver.semimarkov that return LocalPathSimilarityScore

LocalPathSimilarityScore

CleanLocalScoreSemiMarkovGradient.getScore() gets the local similarity score function used to score each position in every path.

Methods in calhoun.analysis.crf.solver.semimarkov with parameters of type LocalPathSimilarityScore

void	CleanLocalScoreSemiMarkovGradient.setScore(LocalPathSimilarityScore score) sets the local similarity score function used to score each position in every path.