Uses of Interface
calhoun.analysis.crf.FeatureManagerNodeExplicitLength

Packages that use FeatureManagerNodeExplicitLength

calhoun.analysis.crf	the interface, main Conrad class, and solver for the Conrad engine.
calhoun.analysis.crf.features.interval13	mdoel definition and setup for the interval13 model
calhoun.analysis.crf.features.interval29
calhoun.analysis.crf.features.tricycle13	basic features and model for the tricycle13 gene calling model
calhoun.analysis.crf.test

Uses of FeatureManagerNodeExplicitLength in calhoun.analysis.crf

Subinterfaces of FeatureManagerNodeExplicitLength in calhoun.analysis.crf

interface

ModelManager overall itnerface for an entire model.

Classes in calhoun.analysis.crf that implement FeatureManagerNodeExplicitLength

class	BeanModel a useful base class for creating model beans.
class	CompositeFeatureManager a feature manager that combines feature types together.
class	ConstrainedFeatureManager a feature manager that combines it's composite feature types together into a single feature.

Uses of FeatureManagerNodeExplicitLength in calhoun.analysis.crf.features.interval13

Classes in calhoun.analysis.crf.features.interval13 that implement FeatureManagerNodeExplicitLength

class	Interval13Model
class	StateLengthLogprobInterval13

Uses of FeatureManagerNodeExplicitLength in calhoun.analysis.crf.features.interval29

Classes in calhoun.analysis.crf.features.interval29 that implement FeatureManagerNodeExplicitLength

class	Interval29Model
class	StateLengthLogprobInterval29

Uses of FeatureManagerNodeExplicitLength in calhoun.analysis.crf.features.tricycle13

Classes in calhoun.analysis.crf.features.tricycle13 that implement FeatureManagerNodeExplicitLength

class

IntronLengthFeature Learns from data an explicit length distribution for introns, and also subtracts out what it would have gotten from just the exponential distribution given by DenseWeightedEdgeFeatures.

Uses of FeatureManagerNodeExplicitLength in calhoun.analysis.crf.test

Classes in calhoun.analysis.crf.test that implement FeatureManagerNodeExplicitLength

static class	TestFeatures.ExplicitHalfExponentialLengthFeature
static class	TestFeatures.GaussianLengthFeature
class	ZeroOrderManager
class	ZeroOrderModel