Uses of Class
calhoun.analysis.crf.CacheStrategySpec

Packages that use CacheStrategySpec

calhoun.analysis.crf	the interface, main Conrad class, and solver for the Conrad engine.
calhoun.analysis.crf.features.generic	features useful across different models
calhoun.analysis.crf.features.interval13	mdoel definition and setup for the interval13 model
calhoun.analysis.crf.features.interval29
calhoun.analysis.crf.features.tricycle13	basic features and model for the tricycle13 gene calling model
calhoun.analysis.crf.test

Uses of CacheStrategySpec in calhoun.analysis.crf

Methods in calhoun.analysis.crf that return CacheStrategySpec

CacheStrategySpec	FeatureManager.getCacheStrategy() caching strategy that the CacheProcessor should use to cache values for this feature.
CacheStrategySpec	CompositeFeatureManager.getCacheStrategy()
CacheStrategySpec	AbstractFeatureManager.getCacheStrategy()

Uses of CacheStrategySpec in calhoun.analysis.crf.features.generic

Methods in calhoun.analysis.crf.features.generic that return CacheStrategySpec

CacheStrategySpec	WeightedStateChanges.getCacheStrategy()
CacheStrategySpec	WeightedEdges.getCacheStrategy()

Uses of CacheStrategySpec in calhoun.analysis.crf.features.interval13

Methods in calhoun.analysis.crf.features.interval13 that return CacheStrategySpec

CacheStrategySpec	StateTransitionsInterval13.getCacheStrategy()
CacheStrategySpec	StateLengthLogprobInterval13.getCacheStrategy()
CacheStrategySpec	ReferenceBasePredictorZeroPadInterval13.getCacheStrategy()
CacheStrategySpec	ReferenceBasePredictorNodeOnlyInterval13.getCacheStrategy()
CacheStrategySpec	ReferenceBasePredictorInterval13.getCacheStrategy()
CacheStrategySpec	PWMInterval13.getCacheStrategy()
CacheStrategySpec	PhylogeneticLogprobInterval13.getCacheStrategy()
CacheStrategySpec	GeneConstraintsInterval13.getCacheStrategy()
CacheStrategySpec	GapFeaturesInterval13.getCacheStrategy()
CacheStrategySpec	FootprintsInterval13.getCacheStrategy()
CacheStrategySpec	ESTInterval13.getCacheStrategy()
CacheStrategySpec	BlastInterval13.getCacheStrategy()

Uses of CacheStrategySpec in calhoun.analysis.crf.features.interval29

Methods in calhoun.analysis.crf.features.interval29 that return CacheStrategySpec

CacheStrategySpec	StateTransitionsInterval29.getCacheStrategy()
CacheStrategySpec	StateLengthLogprobInterval29.getCacheStrategy()
CacheStrategySpec	ReferenceBasePredictorZeroPadInterval29.getCacheStrategy()
CacheStrategySpec	ReferenceBasePredictorNodeOnlyInterval29.getCacheStrategy()
CacheStrategySpec	ReferenceBasePredictorInterval29.getCacheStrategy()
CacheStrategySpec	PWMInterval29.getCacheStrategy()
CacheStrategySpec	GeneConstraintsInterval29.getCacheStrategy()
CacheStrategySpec	GapFeaturesInterval29.getCacheStrategy()
CacheStrategySpec	FootprintsInterval29.getCacheStrategy()
CacheStrategySpec	ESTInterval29.getCacheStrategy()

Uses of CacheStrategySpec in calhoun.analysis.crf.features.tricycle13

Methods in calhoun.analysis.crf.features.tricycle13 that return CacheStrategySpec

CacheStrategySpec	PositionWeightMatrixFeatures.getCacheStrategy()
CacheStrategySpec	PfamPhase.getCacheStrategy()
CacheStrategySpec	PfamGenic.getCacheStrategy()
CacheStrategySpec	GapConjunctionFeatures.getCacheStrategy()
CacheStrategySpec	FelsensteinFeatures.getCacheStrategy()
CacheStrategySpec	ESTIntron.getCacheStrategy()
CacheStrategySpec	ESTEdge.getCacheStrategy()
CacheStrategySpec	EmissionMarkovFeature.getCacheStrategy()
CacheStrategySpec	CodingStopFeature.getCacheStrategy()

Uses of CacheStrategySpec in calhoun.analysis.crf.test

Methods in calhoun.analysis.crf.test that return CacheStrategySpec

CacheStrategySpec	TestFeatures.EmissionFeature.getCacheStrategy()
CacheStrategySpec	TestFeatures.GaussianLengthFeature.getCacheStrategy()
CacheStrategySpec	TestFeatures.ExplicitHalfExponentialLengthFeature.getCacheStrategy()
CacheStrategySpec	TestFeatures.ExponentialLengthFeature.getCacheStrategy()
CacheStrategySpec	TestFeatures.HalfExponentialLengthFeature.getCacheStrategy()
CacheStrategySpec	ConstraintTest.FixedEdges.getCacheStrategy()