Uses of Class
calhoun.analysis.crf.BeanModel.Node

Packages that use BeanModel.Node

calhoun.analysis.crf	the interface, main Conrad class, and solver for the Conrad engine.
calhoun.analysis.crf.features.tricycle13	basic features and model for the tricycle13 gene calling model

Uses of BeanModel.Node in calhoun.analysis.crf

Methods in calhoun.analysis.crf that return BeanModel.Node

BeanModel.Node	BeanModel.Edge.getFrom()
BeanModel.Node	BeanModel.Edge.getTo()

Methods in calhoun.analysis.crf with parameters of type BeanModel.Node

void	BeanModel.Edge.setFrom(BeanModel.Node from)
void	BeanModel.Edge.setTo(BeanModel.Node to)

Method parameters in calhoun.analysis.crf with type arguments of type BeanModel.Node

void	BeanModel.setNodes(java.util.List<BeanModel.Node> nodes) sets the list of hidden states in this model.

Constructors in calhoun.analysis.crf with parameters of type BeanModel.Node

BeanModel.Edge(BeanModel.Node from, BeanModel.Node to)

Uses of BeanModel.Node in calhoun.analysis.crf.features.tricycle13

Methods in calhoun.analysis.crf.features.tricycle13 that return BeanModel.Node

BeanModel.Node	PositionWeightMatrixFeatures.Geometry.getCurrent()
BeanModel.Node	PositionWeightMatrixFeatures.Geometry.getPrev()

Methods in calhoun.analysis.crf.features.tricycle13 that return types with arguments of type BeanModel.Node

java.util.List<BeanModel.Node>	PositionWeightMatrixFeatures.Geometry.getOverlapCorrections()
java.util.List<java.util.List<BeanModel.Node>>	EmissionMarkovFeature.MarkovHistory.getStates()

Methods in calhoun.analysis.crf.features.tricycle13 with parameters of type BeanModel.Node

void	PositionWeightMatrixFeatures.Geometry.setCurrent(BeanModel.Node current)
void	PositionWeightMatrixFeatures.Geometry.setPrev(BeanModel.Node prev)

Method parameters in calhoun.analysis.crf.features.tricycle13 with type arguments of type BeanModel.Node

void	FelsensteinFeatures.setClusters(java.util.List<java.util.List<BeanModel.Node>> clusters)
void	PositionWeightMatrixFeatures.Geometry.setOverlapCorrections(java.util.List<BeanModel.Node> overlapCorrections)
void	EmissionMarkovFeature.MarkovHistory.setStates(java.util.List<java.util.List<BeanModel.Node>> history)