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## Hierarchy For Package calhoun.analysis.crf.features.tricycle13

Package Hierarchies:
  All Packages

## Class Hierarchy

- java.lang.Object
  - calhoun.analysis.crf.AbstractFeatureManager<InputType> (implements calhoun.analysis.crf.FeatureManager<InputType>)
    - calhoun.analysis.crf.features.tricycle13.CodingStopFeature (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
    - calhoun.analysis.crf.features.tricycle13.EmissionMarkovFeature (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.ESTEdge (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.ESTExon (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.ESTIntron (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.FelsensteinFeatures (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.GapConjunctionFeatures (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.GeneConstraints (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
    - calhoun.analysis.crf.features.tricycle13.IntervalPresenceFeatures (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.IntronLengthFeature (implements calhoun.analysis.crf.FeatureManagerNodeExplicitLength<InputType>)
    - calhoun.analysis.crf.features.tricycle13.KmerFeatures (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.MaxentMotifFeatures (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
    - calhoun.analysis.crf.features.tricycle13.PfamGenic (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.PfamPhase (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.tricycle13.PositionWeightMatrixFeatures (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
    - calhoun.analysis.crf.features.tricycle13.PWM_evolution (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
  - calhoun.analysis.crf.features.tricycle13.EmissionMarkovFeature.MarkovHistory (implements java.io.Serializable)
  - calhoun.analysis.crf.features.tricycle13.PositionWeightMatrixFeatures.Geometry (implements java.io.Serializable)

## Enum Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    - calhoun.analysis.crf.features.tricycle13.KmerFeatures.Cardinality

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