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## Uses of Interface
calhoun.analysis.crf.LocalPathSimilarityScore

Packages that use LocalPathSimilarityScore
calhoun.analysis.crf.scoring | local similarity functions used in gene calling models
calhoun.analysis.crf.solver.semimarkov |

Uses of LocalPathSimilarityScore in calhoun.analysis.crf.scoring

Classes in calhoun.analysis.crf.scoring that implement LocalPathSimilarityScore
`class` | `SimScoreMaxStateAgreement`
`class` | `SimScoreMinCodingMiscallsSV13`
`class` | `SimScoreMinExonBoundaryMiscallsSV13`
`class` | `SimScoreStateAndExonBoundariesInt13`

Uses of LocalPathSimilarityScore in calhoun.analysis.crf.solver.semimarkov

Methods in calhoun.analysis.crf.solver.semimarkov that return LocalPathSimilarityScore
`LocalPathSimilarityScore` | `CleanLocalScoreSemiMarkovGradient.getScore()` gets the local similarity score function used to score each position in every path.

Methods in calhoun.analysis.crf.solver.semimarkov with parameters of type LocalPathSimilarityScore
`void` | `CleanLocalScoreSemiMarkovGradient.setScore(LocalPathSimilarityScore score)` sets the local similarity score function used to score each position in every path.

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