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## Uses of Interface
calhoun.analysis.crf.io.FilenameMapper

Packages that use FilenameMapper
calhoun.analysis.crf.io | handles input and output of gene calling formats

Uses of FilenameMapper in calhoun.analysis.crf.io

Classes in calhoun.analysis.crf.io that implement FilenameMapper
`class` | `ExtensionMapper` an implementation of `FilenameMapper` that changes file extensions or add a new file extension onto the source file.

Methods in calhoun.analysis.crf.io that return FilenameMapper
`FilenameMapper` | `OutputHandlerWriter.getFilenameMapper()` gets the mapper which will be used to generate the output filename based on the output location.
`FilenameMapper` | `InputHandlerFile.getMapper()` the mapper used to generate the name of the hidden sequence file from the input sequence file.

Methods in calhoun.analysis.crf.io with parameters of type FilenameMapper
`void` | `OutputHandlerWriter.setFilenameMapper(FilenameMapper filenameMapper)` sets the mapper which will be used to generate the output filename based on the output location.
`void` | `InputHandlerFile.setMapper(FilenameMapper mapper)` the mapper used to generate the name of the hidden sequence file from the input sequence file.

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