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## Uses of Class
calhoun.analysis.crf.features.supporting.phylogenetic.PhylogeneticTreeFelsensteinOrder

Packages that use PhylogeneticTreeFelsensteinOrder
calhoun.analysis.crf.features.supporting.phylogenetic | utility classes for phylogenetic analysis
calhoun.analysis.crf.io | handles input and output of gene calling formats

Uses of PhylogeneticTreeFelsensteinOrder in calhoun.analysis.crf.features.supporting.phylogenetic

Methods in calhoun.analysis.crf.features.supporting.phylogenetic that return PhylogeneticTreeFelsensteinOrder
`PhylogeneticTreeFelsensteinOrder` | `RootedBinaryPhylogeneticTree.getFelsensteinOrder(java.lang.String[] msaOrder)` Given an ordering of species in a multiple alignment file, determine an order for computations by which Felsenstein's algorithm can be performed, and the branch lengths involved at each step.

Constructors in calhoun.analysis.crf.features.supporting.phylogenetic with parameters of type PhylogeneticTreeFelsensteinOrder
`EvolutionaryModel(PhylogeneticTreeFelsensteinOrder T, double[] pi, NucleotideSubstitutionModel R)`

Uses of PhylogeneticTreeFelsensteinOrder in calhoun.analysis.crf.io

Methods in calhoun.analysis.crf.io that return PhylogeneticTreeFelsensteinOrder
`PhylogeneticTreeFelsensteinOrder` | `MultipleAlignmentInputSequence.getFelsensteinOrder()`

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