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## Package calhoun.analysis.crf.features.tricycle13

basic features and model for the tricycle13 gene calling model

See:
Description

Class Summary
CodingStopFeature |
EmissionMarkovFeature |
EmissionMarkovFeature.MarkovHistory |
ESTEdge |
ESTExon |
ESTIntron |
FelsensteinFeatures |
GapConjunctionFeatures |
GeneConstraints | lmplements basic constraints on gene calls.
IntervalPresenceFeatures |
IntronLengthFeature | Learns from data an explicit length distribution for introns, and also subtracts out what it would have gotten from just the exponential distribution given by DenseWeightedEdgeFeatures.
KmerFeatures | trains on the data and then evaluates to P(state | label) for given Kmers.
MaxentMotifFeatures |
PfamGenic |
PfamPhase |
PositionWeightMatrixFeatures |
PositionWeightMatrixFeatures.Geometry |
PWM_evolution |

Enum Summary
KmerFeatures.Cardinality |

## Package calhoun.analysis.crf.features.tricycle13 Description

basic features and model for the tricycle13 gene calling model

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