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## Uses of Class
calhoun.analysis.crf.BeanModel.Node

Packages that use BeanModel.Node
calhoun.analysis.crf | the interface, main `Conrad` class, and solver for the Conrad engine.
calhoun.analysis.crf.features.tricycle13 | basic features and model for the tricycle13 gene calling model

Uses of BeanModel.Node in calhoun.analysis.crf

Methods in calhoun.analysis.crf that return BeanModel.Node
`BeanModel.Node` | `BeanModel.Edge.getFrom()`
`BeanModel.Node` | `BeanModel.Edge.getTo()`

Methods in calhoun.analysis.crf with parameters of type BeanModel.Node
`void` | `BeanModel.Edge.setFrom(BeanModel.Node from)`
`void` | `BeanModel.Edge.setTo(BeanModel.Node to)`

Method parameters in calhoun.analysis.crf with type arguments of type BeanModel.Node
`void` | `BeanModel.setNodes(java.util.List<BeanModel.Node> nodes)` sets the list of hidden states in this model.

Constructors in calhoun.analysis.crf with parameters of type BeanModel.Node
`BeanModel.Edge(BeanModel.Node from, BeanModel.Node to)`

Uses of BeanModel.Node in calhoun.analysis.crf.features.tricycle13

Methods in calhoun.analysis.crf.features.tricycle13 that return BeanModel.Node
`BeanModel.Node` | `PositionWeightMatrixFeatures.Geometry.getCurrent()`
`BeanModel.Node` | `PositionWeightMatrixFeatures.Geometry.getPrev()`

Methods in calhoun.analysis.crf.features.tricycle13 that return types with arguments of type BeanModel.Node
`java.util.List<BeanModel.Node>` | `PositionWeightMatrixFeatures.Geometry.getOverlapCorrections()`
`java.util.List<java.util.List<BeanModel.Node>>` | `EmissionMarkovFeature.MarkovHistory.getStates()`

Methods in calhoun.analysis.crf.features.tricycle13 with parameters of type BeanModel.Node
`void` | `PositionWeightMatrixFeatures.Geometry.setCurrent(BeanModel.Node current)`
`void` | `PositionWeightMatrixFeatures.Geometry.setPrev(BeanModel.Node prev)`

Method parameters in calhoun.analysis.crf.features.tricycle13 with type arguments of type BeanModel.Node
`void` | `FelsensteinFeatures.setClusters(java.util.List<java.util.List<BeanModel.Node>> clusters)`
`void` | `PositionWeightMatrixFeatures.Geometry.setOverlapCorrections(java.util.List<BeanModel.Node> overlapCorrections)`
`void` | `EmissionMarkovFeature.MarkovHistory.setStates(java.util.List<java.util.List<BeanModel.Node>> history)`

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