Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
calhoun.analysis.crf.io.OutputHandler

Packages that use OutputHandler
calhoun.analysis.crf | the interface, main `Conrad` class, and solver for the Conrad engine.
calhoun.analysis.crf.io | handles input and output of gene calling formats

Uses of OutputHandler in calhoun.analysis.crf

Methods in calhoun.analysis.crf that return OutputHandler
`OutputHandler` | `Conrad.getOutputHandler()` gets the configured output handler.

Methods in calhoun.analysis.crf with parameters of type OutputHandler
`void` | `Conrad.setOutputHandler(OutputHandler outputHandler)` sets the configured output handler.

Uses of OutputHandler in calhoun.analysis.crf.io

Classes in calhoun.analysis.crf.io that implement OutputHandler
`class` | `OutputHandlerComposite` an output handler that allows multiple output handlers to be configured.
`class` | `OutputHandlerGeneCallPredict` A legacy output handler that computes basic stats, gene calling statsm and then writes out a GTF file.
`class` | `OutputHandlerGeneCallStats` A legacy output handler that computes basic stats, gene calling statsm and then writes out a GTF file.
`class` | `OutputHandlerGeneCallStatsInterval29`
`class` | `OutputHandlerWriter` writes output to a file using a `TrainingSequenceIO`.

Methods in calhoun.analysis.crf.io that return types with arguments of type OutputHandler
`java.util.List<OutputHandler>` | `OutputHandlerComposite.getHandlers()` retursn the configured list of output handler.

Method parameters in calhoun.analysis.crf.io with type arguments of type OutputHandler
`void` | `OutputHandlerComposite.setHandlers(java.util.List<OutputHandler> handlers)` sets the list of output handlers

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES