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## Uses of Class
calhoun.analysis.crf.io.CompositeInput

Packages that use CompositeInput
calhoun.analysis.crf.features.interval13 | mdoel definition and setup for the interval13 model
calhoun.analysis.crf.features.interval29 |
calhoun.analysis.crf.features.tricycle13 | basic features and model for the tricycle13 gene calling model

Uses of CompositeInput in calhoun.analysis.crf.features.interval13

Method parameters in calhoun.analysis.crf.features.interval13 with type arguments of type CompositeInput
`void` | `ESTInterval13.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int prevState, int state, FeatureList result)`
`void` | `ESTInterval13.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `BlastInterval13.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `ESTInterval13.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`
`void` | `BlastInterval13.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`

Uses of CompositeInput in calhoun.analysis.crf.features.interval29

Method parameters in calhoun.analysis.crf.features.interval29 with type arguments of type CompositeInput
`void` | `ESTInterval29.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int prevState, int state, FeatureList result)`
`void` | `ESTInterval29.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `ESTInterval29.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`

Uses of CompositeInput in calhoun.analysis.crf.features.tricycle13

Method parameters in calhoun.analysis.crf.features.tricycle13 with type arguments of type CompositeInput
`void` | `PWM_evolution.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int previousState, int state, FeatureList result)`
`void` | `ESTEdge.evaluateEdge(InputSequence<? extends CompositeInput> seq, int pos, int prevState, int state, FeatureList result)`
`void` | `PfamPhase.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `PfamGenic.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `ESTIntron.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `ESTExon.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `ESTEdge.evaluateNode(InputSequence<? extends CompositeInput> seq, int pos, int state, FeatureList result)`
`void` | `PWM_evolution.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`
`void` | `PfamPhase.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`
`void` | `PfamGenic.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`
`void` | `ESTIntron.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`
`void` | `ESTExon.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`
`void` | `ESTEdge.train(int startingIndex, ModelManager modelInfo, java.util.List<? extends TrainingSequence<? extends CompositeInput>> data)`

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