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## Uses of Interface
calhoun.analysis.crf.io.InputComponentIO

Packages that use InputComponentIO
calhoun.analysis.crf.io | handles input and output of gene calling formats

Uses of InputComponentIO in calhoun.analysis.crf.io

Subinterfaces of InputComponentIO in calhoun.analysis.crf.io
`interface` | `InterleavedInputComponent` an input component that can be used with the `InputHandlerInterleaved`.

Classes in calhoun.analysis.crf.io that implement InputComponentIO
`class` | `AlignmentTree`
`class` | `BooleanInput` reads in an input consisting of a string of 1's and 0's that correspond to binary values.
`class` | `FastaAlignmentInput`
`class` | `FastaInput`
`class` | `InterleavedInputComponentBase` base class for `InterleavedInputComponent`s.
`class` | `Interval21HiddenSequenceTranslator`
`class` | `IntervalInput` an input component used to read in values that are similar for long intervals.
`class` | `IntInput` reads in an input consisting of a list of ints that correspond to binary values.
`class` | `IntInputInterval29`
`class` | `MultipleAlignmentInput` an input component that reads in multiple alignment sequences.
`class` | `NameInput` an input component that reads in a name for each sequence.
`class` | `StringInput` reads in an input consisting of a string.

Methods in calhoun.analysis.crf.io that return InputComponentIO
`InputComponentIO` | `InputHandlerFile.getInputReader()` gets the reader used to read in input sequences.

Methods in calhoun.analysis.crf.io that return types with arguments of type InputComponentIO
`java.util.Map<java.lang.String,InputComponentIO>` | `InputHandlerDirectory.getInputReaders()` gets the readers used to read in input sequences.

Methods in calhoun.analysis.crf.io with parameters of type InputComponentIO
`void` | `InputHandlerFile.setInputReader(InputComponentIO inputReader)` gets the reader used to read in input sequences.

Method parameters in calhoun.analysis.crf.io with type arguments of type InputComponentIO
`void` | `InputHandlerDirectory.setInputReaders(java.util.Map<java.lang.String,InputComponentIO> inputReader)` sets the readers used to read in input sequences.

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