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## calhoun.analysis.crf.features.supporting.phylogenetic
Class HKY85Model

    java.lang.Object
      calhoun.analysis.crf.features.supporting.phylogenetic.NucleotideSubstitutionModel
          calhoun.analysis.crf.features.supporting.phylogenetic.HKY85Model

All Implemented Interfaces:
  java.io.Serializable

    public class HKY85Model

extends NucleotideSubstitutionModel

See Also:
  Serialized Form

Constructor Summary
`HKY85Model()`
`HKY85Model(double[] parms)`

Method Summary
`java.lang.String` | `getEvolutionaryModelName()`
`double[]` | `getParameters()`
`void` | `setParameters(double[] parms)`
`void` | `summarize()`

Methods inherited from class calhoun.analysis.crf.features.supporting.phylogenetic.NucleotideSubstitutionModel
`getRateMatrix, transitionMatrix`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### HKY85Model

    public HKY85Model(double[] parms)

### HKY85Model

    public HKY85Model()

Method Detail

### getEvolutionaryModelName

    public java.lang.String getEvolutionaryModelName()

  Specified by:
    `getEvolutionaryModelName` in class `NucleotideSubstitutionModel`

### getParameters

    public double[] getParameters()

  Specified by:
    `getParameters` in class `NucleotideSubstitutionModel`

### setParameters

    public void setParameters(double[] parms)

  Specified by:
    `setParameters` in class `NucleotideSubstitutionModel`

### summarize

    public void summarize()

  Specified by:
    `summarize` in class `NucleotideSubstitutionModel`

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