    001    package calhoun.analysis.crf.features.supporting.phylogenetic;
    002
    003    import calhoun.util.ColtUtil;
    004
    005    public class NucleotideSubstitutionModelTest {
    006
    007            public static void main(String[] args) {
    008
    009                    NucleotideSubstitutionModel M = new Kimura80Model(new double[]{1.2,0.5});
    010
    011                    System.out.println("Transition matrix at time 0.1:");
    012                    System.out.println(ColtUtil.format(M.transitionMatrix(0.1)));
    013
    014                    System.out.println("Transition matrix at time 1.0:");
    015                    System.out.println(ColtUtil.format(M.transitionMatrix(1.0)));
    016
    017                    System.out.println("Transition matrix at time 10:");
    018                    System.out.println(ColtUtil.format(M.transitionMatrix(10)));
    019            }
    020    }