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## calhoun.seq
Class FastaIterator.ReaderSequence

    java.lang.Object
      calhoun.seq.SimpleFastaSequence
          calhoun.seq.FastaIterator.ReaderSequence

All Implemented Interfaces:
  FastaSequence, java.io.Serializable

Enclosing class:
  FastaIterator

    public static class FastaIterator.ReaderSequence

extends SimpleFastaSequence

A minimal sequence class that slurps its sequence in immediately.

See Also:
  Serialized Form

Constructor Summary
`FastaIterator.ReaderSequence(java.io.File file, java.lang.String header)`

Method Summary
`java.io.File` | `getFile()`
`java.lang.String` | `loadSequence(java.io.BufferedReader reader)`

Methods inherited from class calhoun.seq.SimpleFastaSequence
`getHeader, getLength, getQuality, getSequence, getSequence, hasQuality, hasSequence, setHeader, setQuality, setSequence`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### FastaIterator.ReaderSequence

    public FastaIterator.ReaderSequence(java.io.File file,
                                        java.lang.String header)

Method Detail

### getFile

    public java.io.File getFile()

### loadSequence

    public java.lang.String loadSequence(java.io.BufferedReader reader)
                                  throws java.io.IOException

  Throws:
    `java.io.IOException`

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