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## Hierarchy For Package calhoun.analysis.crf.features.interval13

Package Hierarchies:
  All Packages

## Class Hierarchy

- java.lang.Object
  - calhoun.analysis.crf.AbstractFeatureManager<InputType> (implements calhoun.analysis.crf.FeatureManager<InputType>)
    - calhoun.analysis.crf.features.interval13.BlastInterval13 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.CompositeFeatureManager (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerEdgeExplicitLength<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>, calhoun.analysis.crf.FeatureManagerNodeExplicitLength<InputType>)
      - calhoun.analysis.crf.BeanModel (implements calhoun.analysis.crf.ModelManager)
        - calhoun.analysis.crf.features.interval13.Interval13Model
    - calhoun.analysis.crf.features.interval13.ESTInterval13 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.interval13.FootprintsInterval13 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.interval13.GapFeaturesInterval13 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.interval13.GeneConstraintsInterval13 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>, calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.interval13.PhylogeneticLogprobInterval13 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
    - calhoun.analysis.crf.features.interval13.PWMInterval13 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
    - calhoun.analysis.crf.features.interval13.ReferenceBasePredictorInterval13Base
      - calhoun.analysis.crf.features.interval13.ReferenceBasePredictorInterval13 (implements calhoun.analysis.crf.FeatureManagerNodeBoundaries<InputType>)
      - calhoun.analysis.crf.features.interval13.ReferenceBasePredictorNodeOnlyInterval13 (implements calhoun.analysis.crf.FeatureManagerNode<InputType>)
      - calhoun.analysis.crf.features.interval13.ReferenceBasePredictorZeroPadInterval13 (implements calhoun.analysis.crf.FeatureManagerNodeBoundaries<InputType>)
    - calhoun.analysis.crf.features.interval13.StateTransitionsInterval13 (implements calhoun.analysis.crf.FeatureManagerEdge<InputType>)
  - calhoun.analysis.crf.features.interval13.Interval13Tools
  - calhoun.analysis.crf.features.interval13.StateLengthLogprobInterval13 (implements calhoun.analysis.crf.FeatureManagerNodeExplicitLength<InputType>)

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