
seed used = 140022017

K12                                  ATG AGC GGA AAA CCG GCA GCG CGT CAG GGC GAC ATG ACG CAG TAT GGC GGT AGC ATT GTT CAG GGT TCA GCC GGG GTG CGC ATT GGT GCC CCC ACC GGC GTG GCC TGT TCG GTG TGC CCC GGC GGA GTG ACG TCC GGC CAT CCG GTC AAT CCC CTG CTC GGT GCA AAG GTC CTT CCC GGT GAA ACC GAC ATC GCC CTG CCC GGC CCG CTG CCG TTC ATC CTC TCC CGC ACC TAC AGC AGT TAC CGG ACA AAA ACG CCC GCG CCG GTG GGG AGC CTC GGC CCC GGC TGG AAA ATG CCT GCG GAT ATC CGC TTA CAG CTG CGC GAT AAC ACA CTG ATA CTC AGT GAT AAC GGC GGC AGA AGC CTG TAT TTT GAG CAC CTG TTT CCC GGT GAG GAC GGT TAC AGC CGC AGC GAG TCA CTG TGG CTG GTG CGC GGC GGC GTG GCG AAA CTG GAT GAA GGT CAC CGG CTG GCC GCA CTC TGG CAG GCG CTG CCG GAA GAA CTC CGC TTA AGT CCG CAT CGT TAT CTG GCG ACA AAC AGT CCG CAG GGG CCG TGG TGG CTG CTC GGT TGG TGT GAG CGG GTG CCG GAA GCG GAT GAG GTG CTG CCT GCG CCG CTG CCG CCG TAC CGG GTA CTG ACC GGG CTG GTG GAC CGC --- --- --- --- --- --- TTC GGG CGC ACA CAG ACG TTC CAC CGC GAA GCC GCC GGT GAA TTC AGC GGC GAA ATC ACC GGC GTG ACG GAT GGT GCC TGG CGT CAC TTC CGG CTG GTA CTG ACC ACG CAG GCG CAG CGG GCA GAA GAA GCC CGG CAG CAG GCC ATT TCC GGC GGG ACG GAA CCG TCC GCT TTT CCT GAT ACC CTG CCG GGT TAC ACC GAA TAT GGC CGG GAC AAC GGC ATC CGT CTG TCT GCC GTG TGG CTG ACG CAC GAC CCG GAA TAC CCG GAG AAT TTA CCT GCC GCG CCG CTG GTG CGC TAT GGC TGG ACG CCA CGC GGC GAA CTG GCG GTG GTG TAT GAC CGT AGT GGC AAA CAG GTG CGC AGC TTT ACT TAC GAT GAT AAA TAC CGG GGC CGG ATG GTG GCG CAC CGT CAC ACG GGC CGG CCG GAA ATC CGT TAC CGT TAC GAC AGC GAC GGG CGG GTG ACA GAA CAG CTA AAC CCG GCA GGC TTA AGC TAC ACG TAT CAG TAT GAG AAA GAC CGC ATC ACC ATC ACC GAC AGC CTG GAC CGC CGT GAA GTG CTG CAC ACG CAG GGC GAA GCC GGG CTG AAG CGG GTG GTG AAA AAG GAA CAC GCG GAC GGC AGC GTC ACG CAG AGT CAG TTT GAC GCC GTG GGC AGG CTC AGG GCA CAG ACG GAT GCC GCA GGC AGG ACA ACA GAG TAC AGC CCG GAT GTG GTG ACG GGC CTC ATC ACG CGC ATA ACC ACG CCG GAT GGC AGG GCA TCG GCG TTT TAC TAT AAC CAC CAC AAC CAG TTA ACG TCA GCC ACC GGG CCT GAC GGG CTG GAA TTG CGC CGG GAA TAT GAT GAA TTG GGC CGT CTG ATT CAG GAA ACT GCC CCT GAC GGC GAT ATC ACC CGC TAC CGT TAT GAT AAT CCA CAC AGT GAC TTA CCC TGC GCA ACG GAA GAT GCC ACC GGC AGC CGG AAA ACC ATG ACG TGG AGC CGT TAC GGT CAG TTG CTG AGC TTC ACC GAC TGT TCC GGT TAT GTA ACC CGT TAT GAC CAT GAC CGC TTC GGG CAG ATG ACG GCG GTG CAC CGC GAG GAA GGG CTG AGT CAG TAC CGC GCA TAC GAC AGC CGT GGA CAG TTA ATT GCC GTG AAA GAC ACG CAG GGC CAT GAA ACG CGG TAT GAA TAC AAC ATC GCC GGT GAC CTG ACC GCC GTC ATT GCC CCG GAC GGC AGC AGA AAC GGG ACA CAG TAC GAT GCG TGG GGA AAG GCC GTC CGT ACC ACG CAG GGC --- GGG CTA ACG CGC AGT ATG GAA TAC GAT GCT GCC GGA CGG GTC ATC CGC CTG ACC AGT GAA AAC GGC AGC CAC ACC ACC TTC CGT TAC --- --- GAT GTA CTT GAC CGG CTG ATA CAG GAA ACC GGC TTT GAC GGC --- --- CGC ACA CAG CGT TAT CAC CAC GAC CTG ACC GGC AAA CTT ATC CGC AGC GAG GAT GAG GGT CTG GTC ACC CAC TGG CAC TAT GAC GAA GCA GAC CGC CTC ACG CAC CGC ACC GTG AAG GGT GAA ACC GCA GAG CGG TGG CAG TAT GAC GAA CGT GGC TGG CTG ACA GAC ATC AGC CAT ATC AGC GAA GGG CAC CGG GTG GCG GTG CAT TAC AGG TAT GAT GAG AAA GGC CGG CTG ACC GGT GAG CGT CAG ACG GTG CAT CAC CCG CAG ACG GAA GCA CTG CTC TGG CAG CAT GAG ACC AGA CAT GCG TAC AAC GCG CAG GGG CTG GCG AAC CGC TGT ATA CCG GAC AGC CTG CCC GCC GTG GAA TGG CTG ACC TAC GGC AGC GGT TAC CTG GCA GGC ATG AAA CTC GGC GAC ACA CCG CTG GTG GAG TAC ACC CGC GAC CGC CTG CAC CGG GAA ACG CTG CGC AGC TTC GGC CGT TAT GAA CTC ACC ACC GCT TAT ACC CCT GCC GGG CAG TTA CAG AGC CAG CAC CTG AAC AGC CTG CTG TCT GAC CGC GAT TAC ACC TGG AAC GAC AAC GGC GAA CTC ATC CGC ATC AGC AGC CCG CGC CAG ACC CGG AGT TAC AGC TAC AGC ACC ACC GGC AGG CTG ACC GGC GTT CAC ACC ACC GCA GCG AAT CTG GAT ATC CGC ATC CCG TAT GCC ACA GAC CCG GCA GGT AAC CGC CTG CCC GAC CCG GAG CTG CAC CCG GAC AGC ACC CTC AGC ATG TGG CCG GAT AAC CGT ATC GCC CGT GAC GCG CAC TAT CTT TAC CGG TAT GAC CGT CAC GGC AGG CTG ACA GAG AAA ACC GAC CTC ATC CCG GAA GGG GTT ATC CGC ACG GAT GAT GAG CGG ACT CAC CGG TAC CAT TAC GAC AGT CAG CAC CGG CTG GTG CAC TAC ACG CGG ACA CAA TAT GAA GAG CCG CTG GTC GAA AGT CGC TAT CTT TAC GAC CCG CTG GGC CGC AGG GTG GCA AAA CGG GTG TGG CGG CGT GAA CGG GAC CTG ACG GGC TGG ATG TCG CTG TCA CGG AAA CCG CAA GTG ACC TGG TAC GGC TGG GAC GGC GAC CGG CTG ACC ACA ATA CAG AAC GAC AGA ACC CGC ATC CAG ACG ATT TAT CAG CCG GGG AGC TTC ACG CCA CTC ATC AGA GTT GAA ACC GCC ACC GGT GAG CTG GCG AAA ACG CAG CGC CGC AGC CTG GCG GAT GCG CTT CAG CAG TCC GGC GGC GAA GAC GGT GGC AGT GTG GTG TTC CCG CCG GTG CTG GTG CAG ATG CTC GAC CGG CTG GAA AGT GAA ATC CTG GCT GAC CGG GTG AGT GAG GAA AGC CGC CGC TGG CTG GCA TCG TGC GGC CTG ACC GTG GAG CAG ATG CAA AAC CAG ATG GAC CCG GTG TAC ACG CCG GCG CGA AAA ATC CAC CTG TAC CAC TGC GAC CAT CGC GGC CTG CCG CTG GCC CTT ATC AGC AAG GAA GGG ACA ACA GAA TGG TGC GCA GAA TAC GAT GAA TGG GGC AAC CTG CTG AAT GAA GAG AAC CCG CAT CAG CTG CAG CAG CTT ATC CGC CTG CCG GGG CAG CAG TAT GAT GAG GAG TCC GGC CTG TAT TAC AAC CGC CAC CGC TAT TAT GAC CCG CTG CAG GGG CGG TAT ATC ACT CAG GAT CCG ATT GGG CTG AAG GGG GGA TGG AAT TTT TAT CAG TAT CCG TTG AAT CCA GTT ACG AAT ACA GAT CCT CTG GGG TTA GAA GTT TTT CCT --- --- --- --- --- --- --- --- --- --- AGA CCA TTC CCC TTG CCA ATT CCA TGG CCC --- --- --- --- --- --- --- AAA AGC CCT GCA CAG CAG CAA GCA GAT GAT AAT GCT GCA AAA GCA TTG ACA AAA TGG TGG AAC GAT ACA GCA TCA CAA AGA ATA TTT GAC TCT CTA ATA TTG AAT AAT CCG GGA CTA GCA TTA GAT ATA ACA ATG ATA GCT TCT CGT GGA AAT GTT GCA GAC ACA GGG ATA ACT GAT CGT GTC AAT GAC ATA ATA AAT GAC AGA TTC TGG AGT GAT GGG AAA AAA CCC GAC AGA TGT GAC GTA CTT CAG GAA CTA ATT GAT TGT GGT GAT ATT AGT GCT AAA GAT GCA AAA AGC ACA CAG --- --- --- --- --- --- AAA GCC TGG AAT TGT CGT CAC TCC AGA CAG TCA AAC GAT AAA AAA AGA 
O157                                 ATG AGC GGA AAA CCG GCG GCG CGT CAG GGC GAC ATG ACG CAG TAT GGC GGT AGC ATT GTT CAG GGT TCA GCC GGG GTG CGC ATT GGT GCC CCC ACC GGC GTG GCC TGT TCG GTG TGC CCC GGC GGA GTG ACG TCC GGC CAT CCG GTC AAT CCC CTG CTC GGT GCA AAG GTC CTT CCC GGT GAA ACC GAC ATC GCC CTG CCC GGC CCG CTG CCG TTC ATC CTC TCC CGC ACC TAC AGC AGT TAC CGG ACA AAA ACG CCC GCG CCG GTG GGG AGC CTC GGC CCC GGC TGG AAA ATG CCT GCG GAT ATC CGC TTA CAG CTG CGC GAT AAC ACA CTG ATA CTC AGT GAT AAC GGC GGC AGA AGC CTG TAT TTT GAG CAC CTG TTT CCC GGT GAG GAC GGT TAC AGC CGC AGC GAG TCA CTC TGG CTG GTG CGC GGC GGC GTG GCG AAA CTG GAT GAA GGT CAC CGG CTG GCC GCA CTC TGG CAG GCG CTG CCG GAA GAA CTC CGC TTA AGT CCG CAT CGT TAT CTG GCG ACA AAC AGT CCG CAG GGG CCG TGG TGG CTG CTC GGC TGG TGT GAG CGG GTG CCG GAA GCG GAT GAG GTG CTG CCT GCG CCG CTG CCG CCG TAC CGG GTA CTG ACC GGG CTG GTG GAC CGC --- --- --- --- --- --- TTC GGG CGC ACA CAG ACG TTC CAC CGC GAA GCC GCC GGT GAA TTC AGC GGC GAA ATC ACC GGC GTG ACG GAT GGT GCC GGG CGT CAC TTC CGG CTG GTA CTG ACC ACG CAG GCG CAG CGG GCA GAA GAA GCC CGG CAG CAG GCC ATT TCC GGC GGG ACG GAA CCG TCC GCT TTT CCT GAT ACC CTG CCG GGT TAC ACC GAA TAT GGC CGG GAC AAC GGC ATC CGT CTG TCT GCC GTG TGG CTG ACG CAC GAC CCG GAA TAC CCG GAG AAT TTA CCT GCC GCG CCG CTG GTG CGC TAT GGC TGG ACG CCG CGC GGC GAA CTG GCG GTG GTG TAT GAC CGT AGT GGC AAA CAG GTG CGC AGC TTT ACT TAC GAT GAT AAA TAC CGG GGC CGG ATG GTG GCG CAC CGT CAC ACG GGC CGG CCG GAA ATC CGT TAC CGT TAC GAC AGC GAC GGG CGG GTG ACA GAA CAG CTA AAC CCG GCA GGC TTA AGC TAC ACG TAT CAG TAT GAG AAA GAC CGC ATC ACC ATC ACC GAC AGC CTG AAC CGC CGT GAA GTC CTG CAC ACG CAG GGT GAA GGC GGG CTG AAG CGG GTG GTG AAA AAG GAA CAC GCG GAC GGC AGC GTC ACG CAG AGT CAG TTT GAC GCG GTG GGC AGG CTC AGG GCA CAG ACG GAT GCC GCA GGC AGG ACA ACA GAA TAC AGC CCG GAT GTG GTG ACG GGC CTC ATC ACG CGC ATC ACC ACG CCG GAT GGC AGG GCA TCG GCG TTT TAC TAT AAC CAC CAC AGC CAG TTA ACG TCA GCC ACC GGG CCT GAC GGG CTG GAA ATA CGC CGG GAA TAT GAT GAA TGG GGC CGT CTG ATT CAG GAA ACT GCC CCT GAC GGC GAT ATC ACC CGC TAC CGT TAT GAT AAT CCA CAC AGT GAC TTA CCC TGC GCA ACG GAA GAT GCC ACC GGC AGC CGG AAA ACC ATG ACG TGG AGC CGT TAC GGT CAG TTG CTG AGC TTC ACC GAC TGT TCC GGT TAT GTA ACC CGT TAT GAC CAT GAC CGC TTC GGG CAG ATG ACG GCG GTG CAC CGC GAG GAA GGG CTG AGT CAG TAC CGC GCA TAC GAC AGC CGT GGA CAG TTA ATT GCC GTG AAA GAC ACG CAG GGC CAT GAA ACG CGG TAT GAA TAC AAC GCC GCC GGT GAC CTG ACC ACC GTC ATT GCC CCG GAC GGC AGC AGA AAC GGG ACA CAG TAC GAT GCG TGG GGA AAA GCC ATC TGT ACC ACG CAG GGC --- GGT CTG ACG CGC AGT ATG GAA TAC GAT GCT GCC GGA CGG GTC ATC CGC CTG ACC AGT GAA AAC GGC AGC CAC ACC ACC TTC CGT TAC --- --- GAT GTA CTC GAC CGG CTG ATA CAG GAA ACC GGC TTT GAC GGC --- --- CGC ACA CAG CGT TAT CAC CAC GAC CTG ACC GGC AAA CTT ATC CGC AGC GAG GAT GAG GGG CTG GTC ACC CAC TGG CAC TAT GAC GAA GCA GAC CGC CTC ACG CAC CGC ACC GTG AAG GGT GAA ACC GCA GAG CGC TGG CAG TAT GAC GAA CGC GGC TGG CTG ACA GAC ATC AGC CAT ATC AGC GAA GGG CAC CGG GTG ACG GTG CAT TAC GGG TAT GAT GAG AAA GGC CGG CTG ACC GGT GAG CGT CAG ACG GTG CAT CAC CCG CAG ACG GAA GCA CTG CTC TGG CAG CAT GAG ACC AGA CAC GCT TAC AAC GCG CAG GGG CTG GCG AAC CGC TGT ATA CCG GAC AGC CTG CCC GCC GTG GAA TGG CTG ACC TAT GGC AGC GGC TGG CTG GCA GGC ATG AAG CTC GGC GAC ACA CCG CTG GTG GAT TTC ACC CGC GAC CGC CTG CAC CGG AAA ACG CTG CGC AGA TTC GGC CGT TAT GAA CTC ACC ACC GCT TAT ACC CCT GCC GGG CAG TTA CAG AGC CAG CAC CTG AAC AGC CTG CAG TAT GAC CGC GAT TAC ACC TGG AAC GAC AAC GGC GAA CTC ATC CGC ATC AGC AGC CCG CGC CAG ACC CGG AGT TAC AGC TAC AGC GAC TCC GGC AGG CTG ACC GGC GTT CAC ACC ACC GCA GCG AAT CTG GAT ATC CGC ATC CCG TAT GCC ACG GAC CCG GCA GGT AAC CGC CTG CCC GAC CCG GAG CTG CAC CCG GAC AGC ACC CTC AGC ATG TGG CCG GAT AAC CGT ATC GCC CGT GAC GCG CAC TAT CTT TAC CGG TAT GAC CGT CAC GGC AGG CTG ACA GAG AAA ACC GAC CTC ATC CCG GAA GGG GTT ATC CGC ACG GAT GAT GAG CGG ACT CAC CGG TAC CAT TAC GAC AGT CAG CAC CGG CTG GTG CAC TAC ACG CGG ACA CAA TAT GAA GAG CCG CTG GTC GAA AGC CGC TAT CTT TAC GAC CCG CTG GGC CGC AGG GTG GCA AAA CGG GTG TGG CGA CGT GAA CGG GAC CTG ACG GGC TGG ATG TCG CTG TCA CGG AAA CCG CAA GTG ACC TGG TAC GGC TGG GAC GGC GAC CGG CTG ACC ACA ATA CAG AAC GAC AGA ACC CGC ATC CAG ACG ATT TAT CAG CCG GGG AGC TTC ACG CCA CTC ATC AGG GTT GAA ACC GCC ACC GGT GAG CTG GCG AAA ACG CAG CGC CGC AGC CTG GCG GAT GCG CTT CAG CAG TCC GGC GGC GAA GAC GGT GGC AGT GTG GTG TTC CCG CCG GTG CTG GTG CAG ATG CTC GAC CGG CTG GAA AGT GAA ATC CTG GCT GAC CGG GTG AGT GAG GAA AGC CGC CGC TGG CTG GCA TCG TGC GGC CTG ACT GTG GCG CAG ATG CAA AGC CAG ATG GAC CCG GTA TAC ACG CCG GCG CGA AAA ATC CAC CTG TAC CAC TGC GAC CAT CGC GGC CTG CCG CTG GCC CTT ATC AGT AAG GAA GGG GCA ACA GAA TGG TGC GCA GAA TAC GAT GAG TGG GGC AAC CTG CTG AAT GAA GAG AAC CCG CAT CAG CTG CAG CAG CTT ATC CGC CTG CCG GGG CAG CAG TAT GAT GAG GAG TCC GGC CTG TAT TAC AAC CGC CAC CGC TAT TAT GAC CCG CTG CAG GGG AGG TAT ATC ACT CAG GAT CCG ATT GGA CTG AAG GGG GGA TGG AAT TTT TAT CAG TAT CCG TTG AAT CCG GTT CAG TAT ATA GAT TCA ATG GGA CTG GCA TCA AAA TAT GGA CAC TTA AAT AAT GGC GGA TAT GGA GCG AGA CCC AAC AAA CCG CCT ACG CCC GAT CCA AGT AAA TTT CCA GAC ATA GCG AAA CAA TTA AGA CTG CCA TAT CCT ATT GAC CAG GCC AGT AGT GCG CCT AAT GTT TTC AAA ACA TTC TTC AGA GCA TTA AGC CCT TAC GAC TAC ACA CTG TAT TGC AGG AAG TGG GTA AAA CCA AAT CTG ACT TGT ACG CCA CAG GAT GAT CCC CAG TAT CCA GGG ATG GAT ACA AAG ACA GCA AGT GAT TAC CTG CCA CAG ACA AAT TGG CCA ACA ACT CAA TTA CCA CCA GGA TAT ACT TGT GCA GAA CCC TAT TTA TTC CCT --- GAC ATT AAT AAA CCC GAT GGG CCA GCA ACA GCA GGG ATA GAT GAT TTG GGT GAA ATT TTA GCT AAA ATG AAA CAG AGA ACA TCG AGA GGA ATA AGA AAA 
EDL933                               ATG AGC GGA AAA CCG GCG GCG CGT CAG GGC GAC ATG ACG CAG TAT GGC GGT AGC ATT GTT CAG GGT TCA GCC GGG GTG CGC ATT GGT GCC CCC ACC GGC GTG GCC TGT TCG GTG TGC CCC GGC GGA GTG ACG TCC GGC CAT CCG GTC AAT CCC CTG CTC GGT GCA AAG GTC CTT CCC GGT GAA ACC GAC ATC GCC CTG CCC GGC CCG CTG CCG TTC ATC CTC TCC CGC ACC TAC AGC AGT TAC CGG ACA AAA ACG CCC GCG CCG GTG GGG AGC CTC GGC CCC GGC TGG AAA ATG CCT GCG GAT ATC CGC TTA CAG CTG CGC GAT AAC ACA CTG ATA CTC AGT GAT AAC GGC GGC AGA AGC CTG TAT TTT GAG CAC CTG TTT CCC GGT GAG GAC GGT TAC AGC CGC AGC GAG TCA CTC TGG CTG GTG CGC GGC GGC GTG GCG AAA CTG GAT GAA GGT CAC CGG CTG GCC GCA CTC TGG CAG GCG CTG CCG GAA GAA CTC CGC TTA AGT CCG CAT CGT TAT CTG GCG ACA AAC AGT CCG CAG GGG CCG TGG TGG CTG CTC GGC TGG TGT GAG CGG GTG CCG GAA GCG GAT GAG GTG CTG CCT GCG CCG CTG CCG CCG TAC CGG GTA CTG ACC GGG CTG GTG GAC CGC --- --- --- --- --- --- TTC GGG CGC ACA CAG ACG TTC CAC CGC GAA GCC GCC GGT GAA TTC AGC GGC GAA ATC ACC GGC GTG ACG GAT GGT GCC GGG CGT CAC TTC CGG CTG GTA CTG ACC ACG CAG GCG CAG CGG GCA GAA GAA GCC CGG CAG CAG GCC ATT TCC GGC GGG ACG GAA CCG TCC GCT TTT CCT GAT ACC CTG CCG GGT TAC ACC GAA TAT GGC CGG GAC AAC GGC ATC CGT CTG TCT GCC GTG TGG CTG ACG CAC GAC CCG GAA TAC CCG GAG AAT TTA CCT GCC GCG CCG CTG GTG CGC TAT GGC TGG ACG CCG CGC GGC GAA CTG GCG GTG GTG TAT GAC CGT AGT GGC AAA CAG GTG CGC AGC TTT ACT TAC GAT GAT AAA TAC CGG GGC CGG ATG GTG GCG CAC CGT CAC ACG GGC CGG CCG GAA ATC CGT TAC CGT TAC GAC AGC GAC GGG CGG GTG ACA GAA CAG CTA AAC CCG GCA GGC TTA AGC TAC ACG TAT CAG TAT GAG AAA GAC CGC ATC ACC ATC ACC GAC AGC CTG AAC CGC CGT GAA GTC CTG CAC ACG CAG GGT GAA GGC GGG CTG AAG CGG GTG GTG AAA AAG GAA CAC GCG GAC GGC AGC GTC ACG CAG AGT CAG TTT GAC GCG GTG GGC AGG CTC AGG GCA CAG ACG GAT GCC GCA GGC AGG ACA ACA GAA TAC AGC CCG GAT GTG GTG ACG GGC CTC ATC ACG CGC ATC ACC ACG CCG GAT GGC AGG GCA TCG GCG TTT TAC TAT AAC CAC CAC AGC CAG TTA ACG TCA GCC ACC GGG CCT GAC GGG CTG GAA ATA CGC CGG GAA TAT GAT GAA TGG GGC CGT CTG ATT CAG GAA ACT GCC CCT GAC GGC GAT ATC ACC CGC TAC CGT TAT GAT AAT CCA CAC AGT GAC TTA CCC TGC GCA ACG GAA GAT GCC ACC GGC AGC CGG AAA ACC ATG ACG TGG AGC CGT TAC GGT CAG TTG CTG AGC TTC ACC GAC TGT TCC GGT TAT GTA ACC CGT TAT GAC CAT GAC CGC TTC GGG CAG ATG ACG GCG GTG CAC CGC GAG GAA GGG CTG AGT CAG TAC CGC GCA TAC GAC AGC CGT GGA CAG TTA ATT GCC GTG AAA GAC ACG CAG GGC CAT GAA ACG CGG TAT GAA TAC AAC GCC GCC GGT GAC CTG ACC ACC GTC ATT GCC CCG GAC GGC AGC AGA AAC GGG ACA CAG TAC GAT GCG TGG GGA AAA GCC ATC TGT ACC ACG CAG GGC --- GGT CTG ACG CGC AGT ATG GAA TAC GAT GCT GCC GGA CGG GTC ATC CGC CTG ACC AGT GAA AAC GGC AGC CAC ACC ACC TTC CGT TAC --- --- GAT GTA CTC GAC CGG CTG ATA CAG GAA ACC GGC TTT GAC GGC --- --- CGC ACA CAG CGT TAT CAC CAC GAC CTG ACC GGC AAA CTT ATC CGC AGC GAG GAT GAG GGG CTG GTC ACC CAC TGG CAC TAT GAC GAA GCA GAC CGC CTC ACG CAC CGC ACC GTG AAG GGT GAA ACC GCA GAG CGC TGG CAG TAT GAC GAA CGC GGC TGG CTG ACA GAC ATC AGC CAT ATC AGC GAA GGG CAC CGG GTG ACG GTG CAT TAC GGG TAT GAT GAG AAA GGC CGG CTG ACC GGT GAG CGT CAG ACG GTG CAT CAC CCG CAG ACG GAA GCA CTG CTC TGG CAG CAT GAG ACC AGA CAC GCT TAC AAC GCG CAG GGG CTG GCG AAC CGC TGT ATA CCG GAC AGC CTG CCC GCC GTG GAA TGG CTG ACC TAT GGC AGC GGC TGG CTG GCA GGC ATG AAG CTC GGC GAC ACA CCG CTG GTG GAT TTC ACC CGC GAC CGC CTG CAC CGG AAA ACG CTG CGC AGA TTC GGC CGT TAT GAA CTC ACC ACC GCT TAT ACC CCT GCC GGG CAG TTA CAG AGC CAG CAC CTG AAC AGC CTG CAG TAT GAC CGC GAT TAC ACC TGG AAC GAC AAC GGC GAA CTC ATC CGC ATC AGC AGC CCG CGC CAG ACC CGG AGT TAC AGC TAC AGC GAC TCC GGC AGG CTG ACC GGC GTT CAC ACC ACC GCA GCG AAT CTG GAT ATC CGC ATC CCG TAT GCC ACG GAC CCG GCA GGT AAC CGC CTG CCC GAC CCG GAG CTG CAC CCG GAC AGC ACC CTC AGC ATG TGG CCG GAT AAC CGT ATC GCC CGT GAC GCG CAC TAT CTT TAC CGG TAT GAC CGT CAC GGC AGG CTG ACA GAG AAA ACC GAC CTC ATC CCG GAA GGG GTT ATC CGC ACG GAT GAT GAG CGG ACT CAC CGG TAC CAT TAC GAC AGT CAG CAC CGG CTG GTG CAC TAC ACG CGG ACA CAA TAT GAA GAG CCG CTG GTC GAA AGC CGC TAT CTT TAC GAC CCG CTG GGC CGC AGG GTG GCA AAA CGG GTG TGG CGA CGT GAA CGG GAC CTG ACG GGC TGG ATG TCG CTG TCA CGG AAA CCG CAA GTG ACC TGG TAC GGC TGG GAC GGC GAC CGG CTG ACC ACA ATA CAG AAC GAC AGA ACC CGC ATC CAG ACG ATT TAT CAG CCG GGG AGC TTC ACG CCA CTC ATC AGG GTT GAA ACC GCC ACC GGT GAG CTG GCG AAA ACG CAG CGC CGC AGC CTG GCG GAT GCG CTT CAG CAG TCC GGC GGC GAA GAC GGT GGC AGT GTG GTG TTC CCG CCG GTG CTG GTG CAG ATG CTC GAC CGG CTG GAA AGT GAA ATC CTG GCT GAC CGG GTG AGT GAG GAA AGC CGC CGC TGG CTG GCA TCG TGC GGC CTG ACT GTG GCG CAG ATG CAA AGC CAG ATG GAC CCG GTA TAC ACG CCG GCG CGA AAA ATC CAC CTG TAC CAC TGC GAC CAT CGC GGC CTG CCG CTG GCG CTT ATC AGT GCG GAA GGG GCA ACA GAA TGG TGC GCA GAA TAC GAT GAA TGG GGC AAC CTG CTG AAT GAA GAG AAC CCG CAT CAG CTG CAG CAG CTT ATC CGC CTG CCG GGG CAG CAG TAT GAT GAG GAG TCC GGC CTG TAT TAC AAC CGC CAC CGC TAT TAT GAC CCG CTG CAC GGG CGA TAT ATC ACT CAC GAT CCG ATT GGA CTG AAG GGG GGA TGG AAT TTT TAT CAG TAT CCG TTG AAT CCG GTC ATC AAT GTG ATC CGC AAG TTG GTT GAT GTT TTT CCT --- --- --- --- --- --- --- --- --- --- AGA CCA TTC CCC TTG CCA ATT CCA TGG CCC --- --- --- --- --- --- --- AAA AGC CCT GCA CAG CAG CAA GCA GAT GAT AAT GCT GCA AAA GCA TTG ACA AAA TGG TGG AAC GAT ACA GCA TCA CAA AGA ATA TTT GAC TCT CTA ATA TTG AAT AAT CCG GGA CTA GCA TTA GAT ATA ACA ATG ATA GCT TCT CGT GGA AAT GTT GCA GAC ACA GGG ATA ACT GAT CGT GTC AAT GAC ATA ATA AAT GAC AGA TTC TGG AGT GAT GGG AAA AAA CCC GAC AGA TGT GAC GTA CTT CAG GAA CTA ATT GAT TGT GGT GAT ATT AGT GCT AAA GAT GCA AAA AGC ACA CAG --- --- --- --- --- --- AAA GCC TGG AAT TGT CGT CAC TCC AGA CAG TCA AAC GAT AAA AAA AGA 


CODONML (in paml 3.14, January 2004)    H:\users\mt269\runpaml\NEWdna80\b3593.phy   Model: One dN/dS ratio 
Codon frequencies: F3x4
Site-class models:  PositiveSelection

ns = 3  	ls = 1411
# site patterns = 258
   13   36    6   18   47    1   24   22   54   59   54   36   33   19    9
    4    4   26   22   41   48   11   46    4    4    5    7   11    7    7
   76   18   18    5    7   51   28   11   36   15   33   16   26    7   31
    8   20    4    6    8   23   33    1    2    4   11    1    4    1    2
    4    1    1    1    1    1    1    7    1    1    2    1    1    2    2
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    3    1    1
    1    1    1    1    1    1    1    1    1    1    2    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    3    1    1    2
    1    1    2    2    1    1    1    1    1    1    2    1    1    1    1
    1    2    1    1    2    1    1    1    1    1    2    1    1    1    1
    1    1    1    1    1    1    1    2    1    1    1    1    1    1    1
    1    3    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    2    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    2    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1

K12                                  ATG AGC GGA AAA CCG GCA GCG CGT CAG GGC GAC ACG TAT GGT ATT GTT TCA GCC GGG GTG CGC CCC ACC TGT TCG TGC TCC CAT GTC AAT CTG CTC GCA AAG CTT GAA ATC TTC TAC AGT CGG ACA TGG CCT GAT TTA AAC ATA AGA TTT GAG CAC CTG GGT GTA --- TGG GCT TCT CCA ACT CTA GAC GTG GGC GCC GCC AGG GAG ATA AAC TTG TTG CCA TTG ATC GCC AAG GTC CGT GGG CTA CTT GGT CGG CGT GCG AGG CAT GCG TAC TAC AAA GAG TAC GAA AGC CTG TCT ACC ACC ACA CAA AGT CGG AGA ACC GAG GTG CGA GCC AGC AAG ACA GAA CAG CGG GGG GTT ACG AAT ACA GAT CCT CTG GGG TTA GAA GTT TTT CCT --- --- --- --- --- --- --- CCA TTC CCC TTG CCA ATT TGG CCC --- --- --- --- --- --- AGC CCT GCA CAG CAG CAA GCA GAT GAT AAT GCT GCA AAA GCA TTG ACA AAA TGG TGG AAC GAT ACA TCA CAA AGA ATA TTT TCT CTA ATA TTG AAT AAT CCG GGA CTA GCA TTA GAT ACA ATG ATA GCT TCT CGT GGA AAT GTT GCA GAC ACA GGG ATA ACT GAT CGT GTC AAT GAC ATA AAT GAC AGA TTC AGT GAT GGG AAA AAA AGA TGT GAC GTA CTT CAG GAA CTA ATT TGT GGT AGT GCT AAA GCA AAA AGC CAG --- --- --- --- AAA GCC TGG AAT TGT CGT CAC TCC CAG TCA AAC GAT AAA AAA AGA 
O157                                 ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..C ... --- G.. ... ... ..G ... ... A.. ..C ..T .G. ..G ... ..A ..C .G. A.A .G. ... ... GC. A.. ..A A.. T.. ..T ..G ..C ..G ..C ..C A.. G.. ..C ..T ..T .GG ..G ..T .T. A.. ..A .A. .A. GA. T.. ..G ... ..C ..A ..G ..T .C. ..A ... ... ..T ... G.. ..G ... A.. ..A ... CA. T.. .T. ... T.A A.. ..A C.G .C. TCA AAA TA. GGA CAC TTA AAT GGC TAT GCG ..C AA. AAA CC. ..T .CG GAT ..A AGT AAA TTT CCA GAC ATA CAA TTA AG. .T. .CA T.T C.T AT. ..C C.G ..C AGT .GT ..G CCT .AT GTT .TC AAA .CA TTC TTC G.. TT. ..C CCT .AC .AC AC. C.G .AT TGC .GG AA. T.G G.. AA. CC. A.. ..T TGT .CG C.A CAG GA. .AT CCC CAG TAT CCA GGG AT. GAT ..A A.G ACA .CA .G. ..T TAC CCA C.G .C. AAT CCA ACA ACT C.. TT. G.. .A. ACT TGT GCA G.A CCC TAT T.A CC. --- .A. AAA CCC .GG CC. GCA GCA GGG GAT TTG GGT G.. ATT .TA GC. AAA ATG A.A CAG ACA ..G .GA .GA .T. .G. .A. 
EDL933                               ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..C ... --- G.. ... ... ..G ... ... A.. ..C ..T .G. ..G ... ..A ..C .G. A.A .G. ... ... GC. A.. ..A A.. T.. ..T ..G ..C ..G ..C ..C A.. G.. ..C ..T ..T .GG ..G ..T .T. A.. ..A .A. .A. GA. T.. ..G ... ..C ..A ..G ..T .C. ..A ... ..G ..T GC. G.. ... ..C ..A ..A ..C .TC ... GTG ATC .GC AA. TT. G.T ..T ... ... ... --- --- --- --- --- --- --- ... ... ... ... ... ... ... ... --- --- --- --- --- --- ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... --- --- --- --- ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... 



Codon usage in sequences
--------------------------------------------------------------------------
Phe TTT 10  9 10 | Ser TCT  4  1  3 | Tyr TAT 33 43 35 | Cys TGT  7  7  8
    TTC 13 16 14 |     TCC  8  8  9 |     TAC 39 39 36 |     TGC  5  6  5
Leu TTA 10 14  9 |     TCA  6  6  6 | *** TAA  0  0  0 | *** TGA  0  0  0
    TTG  7  3  6 |     TCG  4  5  4 |     TAG  0  0  0 | Trp TGG 31 29 32
--------------------------------------------------------------------------
Leu CTT  9  7  8 | Pro CCT 10 12  9 | His CAT 12 11 11 | Arg CGT 27 22 25
    CTC 18 20 20 |     CCC 14 16 14 |     CAC 34 35 37 |     CGC 48 50 51
    CTA  5  1  4 |     CCA  7 13  5 | Gln CAA  5  5  5 |     CGA  1  2  3
    CTG 79 82 77 |     CCG 48 50 50 |     CAG 61 63 60 |     CGG 36 33 33
--------------------------------------------------------------------------
Ile ATT 11 11 11 | Thr ACT  5  8  6 | Asn AAT 15 13 15 | Ser AGT 18 20 18
    ATC 29 30 32 |     ACC 49 47 47 |     AAC 24 22 23 |     AGC 40 40 41
    ATA 12  9 12 |     ACA 23 23 20 | Lys AAA 28 29 29 | Arg AGA 11 11 11
Met ATG 14 16 14 |     ACG 37 40 38 |     AAG  7  9  7 |     AGG  8 10  8
--------------------------------------------------------------------------
Val GTT  7  6  7 | Ala GCT  7  6  8 | Asp GAT 41 40 42 | Gly GGT 23 22 22
    GTC  9  8 10 |     GCC 31 29 28 |     GAC 60 58 60 |     GGC 60 63 62
    GTA  5  6  6 |     GCA 27 25 27 | Glu GAA 55 54 54 |     GGA  8 13  9
    GTG 43 41 42 |     GCG 26 30 29 |     GAG 26 24 23 |     GGG 27 28 27
--------------------------------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: K12            
position  1:    T:0.12854    C:0.30065    A:0.24038    G:0.33043
position  2:    T:0.20407    C:0.22222    A:0.31954    G:0.25418
position  3:    T:0.17357    C:0.34931    A:0.14742    G:0.32970

#2: O157           
position  1:    T:0.13295    C:0.30164    A:0.24160    G:0.32380
position  2:    T:0.19943    C:0.22802    A:0.31808    G:0.25447
position  3:    T:0.17012    C:0.34811    A:0.15082    G:0.33095

#3: EDL933         
position  1:    T:0.12854    C:0.29920    A:0.24110    G:0.33115
position  2:    T:0.20479    C:0.22004    A:0.31736    G:0.25781
position  3:    T:0.17284    C:0.35512    A:0.14524    G:0.32680

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT      29 | Ser S TCT       8 | Tyr Y TAT     111 | Cys C TGT      22
      TTC      43 |       TCC      25 |       TAC     114 |       TGC      16
Leu L TTA      33 |       TCA      18 | *** * TAA       0 | *** * TGA       0
      TTG      16 |       TCG      13 |       TAG       0 | Trp W TGG      92
------------------------------------------------------------------------------
Leu L CTT      24 | Pro P CCT      31 | His H CAT      34 | Arg R CGT      74
      CTC      58 |       CCC      44 |       CAC     106 |       CGC     149
      CTA      10 |       CCA      25 | Gln Q CAA      15 |       CGA       6
      CTG     238 |       CCG     148 |       CAG     184 |       CGG     102
------------------------------------------------------------------------------
Ile I ATT      33 | Thr T ACT      19 | Asn N AAT      43 | Ser S AGT      56
      ATC      91 |       ACC     143 |       AAC      69 |       AGC     121
      ATA      33 |       ACA      66 | Lys K AAA      86 | Arg R AGA      33
Met M ATG      44 |       ACG     115 |       AAG      23 |       AGG      26
------------------------------------------------------------------------------
Val V GTT      20 | Ala A GCT      21 | Asp D GAT     123 | Gly G GGT      67
      GTC      27 |       GCC      88 |       GAC     178 |       GGC     185
      GTA      17 |       GCA      79 | Glu E GAA     163 |       GGA      30
      GTG     126 |       GCG      85 |       GAG      73 |       GGG      82
------------------------------------------------------------------------------

(Ambiguity data are not used in the counts.)


Codon position x base (3x4) table, overall

position  1:    T:0.13003    C:0.30051    A:0.24103    G:0.32844
position  2:    T:0.20275    C:0.22345    A:0.31832    G:0.25548
position  3:    T:0.17216    C:0.35083    A:0.14784    G:0.32916

Codon frequencies under model, for use in evolver:
  0.00465337  0.00948246  0.00399604  0.00889673
  0.00512866  0.01045098  0.00440419  0.00980542
  0.00730612  0.01488815  0.00000000  0.00000000
  0.00586369  0.01194881  0.00000000  0.01121072
  0.01075446  0.02191503  0.00923530  0.02056132
  0.01185289  0.02415338  0.01017857  0.02266141
  0.01688527  0.03440816  0.01450007  0.03228274
  0.01355164  0.02761502  0.01163735  0.02590922
  0.00862597  0.01757768  0.00740748  0.01649189
  0.00950701  0.01937302  0.00816406  0.01817634
  0.01354339  0.02759821  0.01163027  0.02589345
  0.01086954  0.02214955  0.00933413  0.02078135
  0.01175407  0.02395200  0.01009371  0.02247247
  0.01295461  0.02639841  0.01112465  0.02476776
  0.01845473  0.03760635  0.01584784  0.03528338
  0.01481125  0.03018180  0.01271903  0.02831745



Nei & Gojobori 1986. dN/dS (dN, dS)
(Pairwise deletion)
(Note: This matrix is not used in later m.l. analysis.
Use runmode = -2 for ML pairwise comparison.)

K12                 
O157                 0.7672 (0.0782 0.1019)
EDL933               0.3886 (0.0145 0.0374) 0.9915 (0.0725 0.0732)


TREE #  1:  (1, (2, 3));   MP score: -1
This is a rooted tree.  Please check!
check convergence..
lnL(ntime:  4  np:  9):  -7201.687584     +0.000000
   4..1     4..5     5..2     5..3  
  0.00260  0.07450  0.68568  0.00603  1.62728  0.83661  0.06496  0.00000 49.42439
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   0.76881

(1: 0.002601, (2: 0.685677, 3: 0.006027): 0.074505);

(K12: 0.002601, (O157: 0.685677, EDL933: 0.006027): 0.074505);

Detailed output identifying parameters

kappa (ts/tv) =  1.62728


dN/dS for site classes (K=3)

p:   0.83661  0.06496  0.09843
w:   0.00000  1.00000 49.42439

dN & dS for each branch

 branch           t        S        N    dN/dS       dN       dS   S*dS   N*dN

   4..1       0.003    991.7   3241.3   4.9299   0.0011   0.0002    0.2    3.5
   4..5       0.075    991.7   3241.3   4.9299   0.0305   0.0062    6.1   99.0
   5..2       0.686    991.7   3241.3   4.9299   0.2810   0.0570   56.5  911.0
   5..3       0.006    991.7   3241.3   4.9299   0.0025   0.0005    0.5    8.0


Positively selected sites (*: P>95%; **: P>99%)

            Pr(w>1)     post mean +- SE for w

   248 W      0.761         37.874
   400 D      0.599         29.985
   411 A      0.754         37.491
   478 N      0.585         29.352
   491 L      0.991**       48.967
   498 L      0.618         30.930
   604 I      0.993**       49.103
   610 A      0.662         33.059
   630 V      0.599         30.008
   631 R      0.776         38.598
   750 A      0.670         33.448
   754 R      0.714         35.589
   812 Y      0.985*        48.694
   825 E      0.639         31.924
   826 Y      0.547         27.467
   834 E      0.652         32.592
   838 S      0.705         35.134
   863 L      0.737         36.687
   864 S      0.799         39.703
   892 T      0.993**       49.103
   893 T      0.628         31.392
  1138 E      0.732         36.449
  1142 N      0.585         29.352
  1171 K      1.000**       49.419
  1174 T      0.880         43.627
  1225 Q      0.916         45.335
  1231 Q      0.916         45.335
  1251 T      1.000**       49.424
  1252 N      0.753         37.471
  1253 T      1.000**       49.423
  1254 D      1.000**       49.424
  1255 P      1.000**       49.419
  1256 L      0.999**       49.377
  1257 G      1.000**       49.424
  1258 L      1.000**       49.423
  1259 E      0.998**       49.339
  1260 V      1.000**       49.404
  1261 F      1.000**       49.421
  1262 P      0.996**       49.240
  1275 F      0.991**       48.971
  1276 P      1.000**       49.404
  1277 L      0.986*        48.759
  1279 I      0.982*        48.545
  1281 W      1.000**       49.405
  1291 S      0.999**       49.380
  1292 P      1.000**       49.412
  1293 A      0.997**       49.255
  1294 Q      0.605         30.283
  1295 Q      0.911         45.104
  1296 Q      0.989*        48.895
  1297 A      0.966*        47.791
  1298 D      0.992**       49.026
  1300 N      0.981*        48.519
  1302 A      1.000**       49.412
  1303 K      0.987*        48.793
  1305 L      0.999**       49.392
  1306 T      0.991**       48.996
  1307 K      1.000**       49.411
  1308 W      0.988*        48.834
  1309 W      0.999**       49.398
  1310 N      0.971*        48.004
  1311 D      0.999**       49.369
  1312 T      1.000**       49.408
  1313 A      0.997**       49.255
  1314 S      0.929         46.006
  1315 Q      0.993**       49.105
  1316 R      0.603         30.176
  1317 I      1.000**       49.407
  1318 F      0.961*        47.518
  1320 S      0.944         46.717
  1321 L      0.998**       49.312
  1322 I      0.981*        48.484
  1323 L      0.997**       49.300
  1324 N      0.999**       49.369
  1325 N      0.977*        48.306
  1326 P      0.986*        48.735
  1327 G      0.943         46.648
  1328 L      0.889         44.067
  1329 A      0.995**       49.191
  1330 L      0.996**       49.249
  1331 D      0.580         29.064
  1332 I      0.981*        48.484
  1334 M      1.000**       49.415
  1335 I      0.975*        48.215
  1336 A      0.964*        47.668
  1337 S      1.000**       49.412
  1338 R      0.993**       49.080
  1339 G      0.982*        48.572
  1340 N      0.999**       49.361
  1341 V      1.000**       49.402
  1342 A      1.000**       49.416
  1343 D      0.999**       49.371
  1344 T      0.999**       49.360
  1345 G      0.980*        48.442
  1346 I      1.000**       49.413
  1348 D      0.966*        47.778
  1349 R      1.000**       49.413
  1350 V      0.929         45.986
  1351 N      0.633         31.645
  1353 I      1.000**       49.414
  1354 I      0.981*        48.484
  1355 N      1.000**       49.413
  1356 D      0.954*        47.187
  1357 R      0.847         42.015
  1358 F      0.999**       49.389
  1360 S      1.000**       49.412
  1361 D      1.000**       49.407
  1362 G      0.999**       49.383
  1363 K      0.690         34.409
  1364 K      0.998**       49.306
  1366 D      0.999**       49.371
  1367 R      0.780         38.784
  1368 C      0.799         39.684
  1369 D      0.996**       49.241
  1370 V      1.000**       49.415
  1371 L      0.999**       49.397
  1372 Q      0.935         46.290
  1373 E      0.999**       49.399
  1374 L      1.000**       49.416
  1375 I      0.994**       49.117
  1376 D      0.999**       49.369
  1377 C      0.997**       49.275
  1381 S      0.647         32.343
  1382 A      1.000**       49.412
  1383 K      1.000**       49.408
  1385 A      0.929         45.990
  1386 K      0.996**       49.218
  1387 S      0.999**       49.368
  1389 Q      0.998**       49.308
  1396 K      0.618         30.935
  1397 A      0.996**       49.246
  1398 W      0.978*        48.349
  1399 N      0.993**       49.065
  1400 C      1.000**       49.420
  1401 R      1.000**       49.408
  1402 H      0.973*        48.139
  1403 S      0.999**       49.395
  1405 Q      0.998**       49.350
  1407 N      0.968*        47.877
  1408 D      0.975*        48.235
  1409 K      0.752         37.438
  1410 K      0.689         34.370
  1411 R      0.713         35.535


Bayes Empirical Bayes (BEB) analysis
Positively selected sites (*: P>95%; **: P>99%)

            Pr(w>1)     post mean +- SE for w

   248 W      0.830         8.794 +- 3.781
   400 D      0.762         8.101 +- 4.297
   411 A      0.819         8.678 +- 3.881
   478 N      0.779         8.276 +- 4.183
   491 L      0.992**       10.422 +- 0.871
   498 L      0.857         9.062 +- 3.525
   604 I      0.992**       10.420 +- 0.872
   610 A      0.831         8.803 +- 3.772
   630 V      0.814         8.631 +- 3.918
   631 R      0.898         9.475 +- 3.045
   750 A      0.841         8.902 +- 3.682
   754 R      0.823         8.720 +- 3.845
   812 Y      0.993**       10.430 +- 0.815
   825 E      0.834         8.834 +- 3.744
   826 Y      0.845         8.943 +- 3.643
   834 E      0.870         9.193 +- 3.385
   838 S      0.886         9.359 +- 3.192
   863 L      0.808         8.566 +- 3.971
   864 S      0.901         9.504 +- 3.006
   892 T      0.989*        10.392 +- 1.012
   893 T      0.857         9.058 +- 3.529
  1138 E      0.832         8.813 +- 3.763
  1142 N      0.779         8.276 +- 4.183
  1171 K      0.999**       10.494 +- 0.243
  1174 T      0.907         9.567 +- 2.919
  1225 Q      0.932         9.817 +- 2.527
  1231 Q      0.932         9.817 +- 2.527
  1251 T      1.000**       10.500 +- 0.057
  1252 N      0.896         9.453 +- 3.073
  1253 T      1.000**       10.497 +- 0.172
  1254 D      0.999**       10.492 +- 0.269
  1255 P      0.998**       10.479 +- 0.444
  1256 L      0.997**       10.473 +- 0.503
  1257 G      0.999**       10.492 +- 0.271
  1258 L      0.999**       10.489 +- 0.317
  1259 E      0.997**       10.470 +- 0.537
  1260 V      0.998**       10.476 +- 0.476
  1261 F      1.000**       10.496 +- 0.196
  1262 P      0.996**       10.458 +- 0.634
  1275 F      0.994**       10.446 +- 0.715
  1276 P      0.999**       10.493 +- 0.254
  1277 L      0.979*        10.294 +- 1.420
  1279 I      0.986*        10.359 +- 1.171
  1281 W      0.999**       10.493 +- 0.262
  1291 S      0.999**       10.491 +- 0.286
  1292 P      0.997**       10.475 +- 0.498
  1293 A      0.996**       10.461 +- 0.613
  1294 Q      0.853         9.017 +- 3.570
  1295 Q      0.900         9.492 +- 3.022
  1296 Q      0.994**       10.444 +- 0.730
  1297 A      0.912         9.619 +- 2.844
  1298 D      0.994**       10.447 +- 0.708
  1300 N      0.992**       10.424 +- 0.849
  1302 A      0.999**       10.489 +- 0.325
  1303 K      0.994**       10.440 +- 0.756
  1305 L      0.994**       10.436 +- 0.794
  1306 T      0.987*        10.373 +- 1.115
  1307 K      0.999**       10.493 +- 0.255
  1308 W      0.993**       10.435 +- 0.784
  1309 W      0.998**       10.476 +- 0.475
  1310 N      0.973*        10.232 +- 1.613
  1311 D      0.996**       10.465 +- 0.581
  1312 T      0.998**       10.479 +- 0.443
  1313 A      0.996**       10.461 +- 0.613
  1314 S      0.926         9.754 +- 2.636
  1315 Q      0.956*        10.061 +- 2.054
  1316 R      0.847         8.963 +- 3.624
  1317 I      0.997**       10.474 +- 0.493
  1318 F      0.902         9.511 +- 2.997
  1320 S      0.894         9.431 +- 3.102
  1321 L      0.996**       10.463 +- 0.591
  1322 I      0.986*        10.361 +- 1.161
  1323 L      0.996**       10.460 +- 0.620
  1324 N      0.996**       10.466 +- 0.567
  1325 N      0.992**       10.421 +- 0.867
  1326 P      0.993**       10.434 +- 0.790
  1327 G      0.898         9.471 +- 3.049
  1328 L      0.914         9.638 +- 2.816
  1329 A      0.995**       10.455 +- 0.656
  1330 L      0.985*        10.353 +- 1.203
  1331 D      0.851         8.999 +- 3.587
  1332 I      0.986*        10.361 +- 1.161
  1334 M      0.999**       10.495 +- 0.215
  1335 I      0.986*        10.362 +- 1.158
  1336 A      0.911         9.609 +- 2.858
  1337 S      0.999**       10.490 +- 0.305
  1338 R      0.995**       10.448 +- 0.702
  1339 G      0.983*        10.332 +- 1.281
  1340 N      0.996**       10.464 +- 0.588
  1341 V      0.999**       10.489 +- 0.328
  1342 A      0.999**       10.492 +- 0.269
  1343 D      0.998**       10.484 +- 0.394
  1344 T      0.996**       10.460 +- 0.619
  1345 G      0.993**       10.430 +- 0.813
  1346 I      0.999**       10.493 +- 0.252
  1348 D      0.990**       10.405 +- 0.949
  1349 R      0.998**       10.482 +- 0.415
  1350 V      0.892         9.414 +- 3.125
  1351 N      0.866         9.150 +- 3.432
  1353 I      0.999**       10.491 +- 0.289
  1354 I      0.986*        10.361 +- 1.161
  1355 N      0.999**       10.493 +- 0.266
  1356 D      0.987*        10.380 +- 1.063
  1357 R      0.910         9.595 +- 2.879
  1358 F      0.997**       10.470 +- 0.539
  1360 S      0.998**       10.485 +- 0.381
  1361 D      0.999**       10.492 +- 0.280
  1362 G      0.998**       10.479 +- 0.445
  1363 K      0.878         9.271 +- 3.296
  1364 K      0.996**       10.462 +- 0.603
  1366 D      0.998**       10.484 +- 0.394
  1367 R      0.897         9.464 +- 3.058
  1368 C      0.901         9.501 +- 3.010
  1369 D      0.994**       10.446 +- 0.715
  1370 V      0.998**       10.483 +- 0.405
  1371 L      0.997**       10.469 +- 0.548
  1372 Q      0.919         9.683 +- 2.751
  1373 E      0.999**       10.492 +- 0.268
  1374 L      0.999**       10.492 +- 0.269
  1375 I      0.986*        10.356 +- 1.187
  1376 D      0.996**       10.465 +- 0.581
  1377 C      0.996**       10.461 +- 0.606
  1381 S      0.867         9.166 +- 3.414
  1382 A      0.999**       10.493 +- 0.257
  1383 K      0.999**       10.494 +- 0.248
  1385 A      0.897         9.470 +- 3.051
  1386 K      0.995**       10.456 +- 0.644
  1387 S      0.998**       10.476 +- 0.477
  1389 Q      0.995**       10.455 +- 0.652
  1396 K      0.865         9.141 +- 3.441
  1397 A      0.994**       10.446 +- 0.720
  1398 W      0.932         9.817 +- 2.531
  1399 N      0.995**       10.449 +- 0.696
  1400 C      1.000**       10.496 +- 0.191
  1401 R      0.998**       10.481 +- 0.427
  1402 H      0.991**       10.416 +- 0.892
  1403 S      0.999**       10.490 +- 0.301
  1405 Q      0.996**       10.461 +- 0.612
  1407 N      0.991**       10.412 +- 0.911
  1408 D      0.982*        10.319 +- 1.328
  1409 K      0.890         9.399 +- 3.142
  1410 K      0.884         9.331 +- 3.226
  1411 R      0.886         9.356 +- 3.195



The grid (see ternary graph for p0-p1)

w0:   0.050  0.150  0.250  0.350  0.450  0.550  0.650  0.750  0.850  0.950
w2:   1.500  2.500  3.500  4.500  5.500  6.500  7.500  8.500  9.500 10.500


Posterior on the grid

w0:   1.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000
w2:   0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  1.000

Posterior for p0-p1 (see the ternary graph)

 0.000
 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.999 0.000 0.000

sum of density on p0-p1 =   1.000000
