
seed used = 140017169

K12                                  ATG ACA GAT GTA ACG ATT AAA ACG CTG GCC GCA GAG CGA CAG ACC TCC GTG GAA CGC CTG GTA CAG CAA TTT GCT GAT GCA GGT ATC CGG AAG TCT GCT GAC GAC TCT GTG TCT GCA CAA GAG AAA CAG ACT TTG ATT GAC CAC CTG AAT CAG AAA AAT TCA GGC CCG GAC AAA TTG ACG CTG CAA CGT AAA ACA CGC AGC ACC CTT AAC ATT CCT GGT ACC GGT GGA AAA AGC AAA TCG GTA CAA ATC GAA GTC CGC AAG AAA CGC ACC TTT GTG AAA CGC GAT CCG CAA GAG GCT GAA CGC CTT GCA GCG GAA GAG CAA GCG CAG CGT GAA GCG GAA GAG CAA GCC CGT CGT GAG GCA GAA GAA TCG GCT AAA CGC GAG GCG CAA CAA AAA GCT GAA CGT GAG GCC GCA GAA CAA GCT AAG CGT GAA GCT GCT GAA CAA GCG AAA CGT GAA GCT GCG GAA AAA GAC AAA GTG AGC AAT CAA CAA GAC GAT ATG ACT AAA AAC GCC CAG GCT GAA AAA GCC CGC CGT GAG CAG GAA GCT GCA GAG CTC AAG CGT AAA GCT GAA GAA GAA GCG CGT CGT AAA CTC GAA GAA GAA GCA CGT CGC GTT GCT GAA GAA GCA CGT CGT ATG GCG GAA GAA AAC AAA TGG ACT GAT AAC GCG GAA CCG ACT GAA GAT TCC AGC GAT TAT CAC GTC ACT ACT TCT CAA CAT GCT CGC CAG GCA GAA GAC GAA AGC GAT CGT GAA GTC GAA GGC GGC CGT GGC CGT GGT CGT AAC GCG AAA GCA GCG CGT CCG AAG AAA GGC AAC AAA CAC GCT GAA TCA AAA GCT GAT CGT GAA GAA GCA CGC GCA GCA GTA CGT GGC GGT AAA GGC GGA AAA CGT AAA GGT TCT TCG CTG CAG CAA GGC TTC CAG AAG CCT GCT CAG GCC GTT AAC CGT GAC GTT GTG ATC GGC GAA ACT ATC ACC GTT GGC GAA CTG GCG AAC AAG ATG GCG GTT AAA GGC TCT CAG GTC ATC AAA GCG ATG ATG AAA CTG GGC GCA ATG GCA ACC ATC AAC CAG GTT ATC GAT CAG GAA ACC GCA CAG CTG GTT GCT GAA GAG ATG GGC CAT AAA GTT ATC CTG CGT CGT GAA AAC GAG CTG GAA GAG GCG GTA ATG AGC GAC CGT GAC ACG GGT GCT GCG GCT GAA CCG CGC GCG CCG GTT GTG ACC ATC ATG GGT CAC GTT GAC CAC GGT AAA ACC TCT CTG CTG GAC TAC ATT CGT TCA ACG AAA GTG GCC TCT GGC GAA GCG GGC GGC ATT ACC CAG CAC ATT GGT GCA TAC CAC GTT GAA ACT GAA AAC GGC ATG ATC ACC TTC CTG GAC ACC CCG GGG CAC GCC GCG TTT ACT TCA ATG CGT GCT CGT GGT GCG CAG GCA ACG GAC ATC GTA GTC CTG GTT GTT GCT GCC GAC GAC GGT GTG ATG CCG CAG ACC ATC GAA GCA ATC CAG CAC GCG AAA GCG GCG CAG GTA CCG GTG GTG GTT GCA GTG AAC AAG ATC GAT AAA CCA GAA GCT GAT CCG GAT CGC GTT AAG AAC GAA CTC TCC CAG TAC GGC ATC CTG CCG GAA GAG TGG GGC GGT GAA AGC CAG TTC GTA CAC GTA TCT GCG AAA GCG GGT ACC GGT ATC GAT GAA CTG CTG GAC GCT ATC CTG CTG CAG GCG GAA GTT CTG GAG CTG AAA GCG GTA CGT AAA GGT ATG GCG AGC GGT GCG GTT ATC GAA TCC TTC CTC GAT AAA GGT CGT GGT CCG GTT GCT ACC GTT CTG GTA CGT GAA GGT ACT CTG CAC AAG GGC GAT ATC GTT CTG TGT GGC TTC GAA TAC GGT CGT GTT CGT GCG ATG CGT AAC GAA CTG GGT CAG GAA GTG CTG GAA GCG GGT CCG TCC ATT CCG GTG GAA ATC CTC GGC CTG TCC GGC GTA CCG GCT GCG GGT GAT GAA GTT ACC GTT GTA CGT GAC GAG AAG AAA GCG CGT GAA GTT GCA CTC TAT CGT CAG GGT AAA TTC CGC GAA GTT AAA CTG GCG CGT CAG CAG AAA TCT AAA CTC GAG AAC ATG TTC GCC AAC ATG ACC GAA GGC GAA GTT CAC GAA GTG AAT ATC GTC CTG AAG GCA GAC GTA CAG GGT TCT GTC GAA GCG ATC TCC GAC TCC TTG CTG AAA CTG TCT ACT GAC GAA GTT AAA GTG AAG ATC ATC GGT TCT GGC GTA GGT GGT ATC ACC GAA ACC GAC GCC ACC CTG GCT GCG GCG TCC AAC GCC ATC CTG GTT GGC TTT AAC GTA CGT GCT GAT GCC TCT GCA CGT AAA GTG ATT GAA GCG GAA AGC CTG GAT CTG CGT TAC TAC TCC GTC ATC TAT AAC CTG ATT GAC GAA GTG AAA GCG GCG ATG AGC GGT ATG CTG TCT CCG GAA CTG AAA CAG CAG ATT ATC GGT CTG GCG GAA GTT CGT GAC GTG TTC AAA TCG CCG AAA TTT GGT GCC ATC GCA GGC TGT ATG GTT ACC GAA GGT GTG GTT AAA CGT CAC AAC CCG ATC CGC GTT CTG CGT GAC AAC GTG GTT ATC TAC GAA GGC GAG CTG GAG TCC CTG CGC CGC TTC AAA GAT GAC GTT AAC GAA GTC CGT AAC GGT ATG GAA TGT GGT ATC GGC GTT AAG AAC TAC AAC GAC GTC CGC ACT GGC GAT GTG ATC GAA GTA TTC GAA ATC ATC GAG ATC CAA CGT ACC ATT GCT 
S2457T                               ATG ACA GAT GTA ACG ATT AAA ACG CTG GCC GCA GAG CGA CAG ACC TCC GTG GAA CGC CTG GTA CAG CAA TTT GCT GAT GCA GGT ATC CGG AAG TCT GCT GAC GAC TCT GTG TCT GCA CAA GAG AAA CAG ACT TTG ATT GAC CAC CTG AAT CAG AAA AAT TCA GGC CCG GAC AAA TTG ACG CTG CAA CGT AAA ACA CGC AGC ACC CTT AAC ATT CCT GGT ACC GGT GGA AAA AGC AAA TCG GTA CAA ATC GAA GTC CGC AAG AAA CGC ACC TTT GTG AAA CGC GAT CCG CAA GAG GCT GAA CGC CTT GCA GCG GAA GAG CAA GCC CGT --- --- --- --- --- --- --- --- CGT GAG GCA GAA GAA TCG GCT AAA CGC GAG GCG CAA CAA AAA GCT GAA CGT GAG GCC GCA GAA CAA GCT AAG CGT GAA GCT GCT GAA CAA GCG AAA CGT GAA GCT GCG GAA AAA GAC AAA GTG AGC AAT CAA CAA GAC GAT ATG ACT AAA AAC GCC CAG GCT GAA AAA GCC CGC CGT GAG CAG GAA GCT GCA GAG CTC AAG CGT AAA GCT GAA GAA GAA GCG CGT CGT AAA CTC GAA GAA GAA GCA CGT CGC GTT GCT GAA GAA GCA CGT CGT ATG GCG GAA GAA AAC AAA TGG ACT GAT AAC GCG GAA CCG ACT GAA GAT TCC AGC GAT TAT CAC GTC ACT ACT TCT CAA CAT GCT CGC CAG GCA GAA GAC GAA AGC GAT CGT GAA GTC GAA GGC GGC CGT GGC CGT GGT CGT AAC GCG AAA GCA GCG CGT CCG AAG AAA GGC AAC AAA CAC GCT GAA TCA AAA GCT GAT CGT GAA GAA GCA CGC GCA GCA GTA CGT GGC GGT AAA GGC GGA AAA CGT AAA GGT TCT TCG CTG CAG CAA GGC TTC CAG AAG CCT GCT CAG GCC GTT AAC CGT GAC GTT GTG ATC GGC GAA ACT ATC ACC GTT GGC GAA CTG GCG AAC AAG ATG GCG GTT AAA GGC TCT CAG GTC ATC AAA GCG ATG ATG AAA CTG GGC GCA ATG GCA ACC ATC AAC CAG GTT ATC GAT CAG GAA ACC GCA CAG CTG GTT GCT GAA GAG ATG GGC CAT AAA GTT ATC CTG CGT CGT GAA AAC GAG CTG GAA GAG GCG GTA ATG AGC GAC CGT GAC ACG GGT GCT GCG GCT GAA CCG CGC GCG CCG GTT GTG ACC ATC ATG GGT CAC GTT GAC CAC GGT AAA ACC TCT CTG CTG GAC TAC ATT CGT TCA ACG AAA GTG GCC TCT GGC GAA GCG GGC GGC ATT ACC CAG CAC ATT GGT GCA TAC CAC GTT GAA ACT GAA AAC GGC ATG ATC ACC TTC CTG GAC ACC CCG GGG CAC GCC GCG TTT ACT TCA ATG CGT GCT CGT GGT GCG CAG GCA ACG GAC ATC GTA GTC CTG GTT GTT GCT GCC GAC GAC GGC GTA ATG CCG CAG ACG ATC GAA GCA ATC CAG CAC GCG AAA GCG GCG CAG GTT CCG GTG GTC GTT GCA GTG AAC AAG ATC GAT AAA CCA GAA GCC GAT CCG GAT CGC GTT AAG AAC GAA CTC TCC CAG TAC GGC ATC CTG CCG GAA GAG TGG GGC GGT GAA AGC CAG TTC GTA CAT GTG TCT GCG AAA GCG GGT ACT GGT ATC GAT GAA CTG CTG GAC GCT ATC CTG CTG CAG GCG GAA GTT CTG GAG CTG AAA GCG GTA CGT AAA GGT ATG GCG AGC GGT GCG GTT ATC GAA TCC TTC CTC GAT AAA GGT CGT GGT CCG GTT GCT ACC GTT CTG GTA CGT GAA GGT ACT CTG CAC AAG GGC GAT ATC GTT CTG TGT GGC TTC GAA TAC GGT CGT GTT CGT GCG ATG CGT AAC GAA CTG GGT CAG GAA GTG CTG GAA GCG GGT CCG TCC ATT CCG GTG GAA ATC CTC GGC CTG TCC GGC GTA CCG GCT GCG GGT GAT GAA GTT ACC GTT GTA CGT GAC GAG AAG AAA GCG CGT GAA GTT GCA CTG TAT CGT CAG GGT AAA TTC CGC GAA GTT AAA CTG GCG CGT CAG CAG AAA TCT AAA CTC GAG AAC ATG TTC GCC AAC ATG ACC GAA GGC GAA GTT CAC GAA GTG AAC ATC GTC CTG AAG GCA GAC GTA CAG GGT TCT GTG GAA GCG ATC TCC GAC TCC TTG CTG AAA CTG TCT ACT GAC GAA GTT AAA GTG AAG ATC ATC GGT TCT GGC GTA GGT GGT ATC ACC GAA ACC GAC GCC ACC CTG GCT GCG GCG TCC AAC GCC ATC CTG GTT GGC TTC AAC GTA CGT GCT GAT GCC TCT GCA CGT AAA GTG ATT GAA GCG GAA AGC CTG GAT CTG CGT TAC TAC TCC GTC ATC TAT AAC CTG ATT GAC GAA GTG AAA GCG GCG ATG AGC GGT ATG CTG TCT CCG GAA CTG AAA CAG CAG ATT ATC GGT CTG GCG GAA GTT CGT GAC GTG TTC AAA TCG CCG AAA TTT GGT GCC ATC GCA GGC TGT ATG GTT ACC GAA GGT GTG GTT AAA CGT CAC AAC CCG ATC CGC GTT CTG CGT GAC AAC GTG GTT ATC TAC GAA GGC GAG CTG GAG TCC CTG CGC CGC TTC AAA GAT GAC GTT AAC GAA GTC CGT AAC GGT ATG GAA TGT GGT ATC GGC GTT AAG AAC TAC AAC GAC GTC CGC ACT GGC GAT GTG ATC GAA GTA TTC GAA ATC ATC GAG ATC CAA CGT ACC ATC GCT 
Shig4337                             ATG ACA GAT GTA ACG ATT AAA ACG CTG GCC GCA GAG CGA CAG ACC TCC GTG GAA CGC CTG GTA CAG CAA TTT GCT GAT GCA GGT ATC CGG AAG TCT GCT GAC GAC TCT GTG TCT GCA CAA GAG AAA CAG ACT TTG ATT GAC CAC CTG AAT CAG AAA AAT TCA GGC CCG GAC AAA TTG ACG CTG CAA CGT AAA ACA CGC AGC ACC CTT AAC ATT CCT GGT ACC GGT GGA AAA AGC AAA TCG GTA CAA ATC GAA GTC CGC AAG AAA CGC ACC TTT GTG AAA CGC GAT CCG CAA GAG GCT GAA CGC CTT GCA GCG GAA GAG CAA GCC CGT --- --- --- --- --- --- --- --- CGT GAG GCA GAA GAA TCG GCT AAA CGC GAG GCG CAA CAA AAA GCT GAA CGT GAG GCC GCA GAA CAA GCT AAG CGT GAA GCT GCT GAA CAA GCG AAA CGT GAA GCT GCG GAA AAA GAC AAA GTG AGC AAT CAA CAA GAC GAT ATG ACT AAA AAC GCC CAG GCT GAA AAA GCC CGC CGT GAG CAG GAA GCT GCA GAG CTC AAG CGT AAA GCT GAA GAA GAA GCG CGT CGT AAA CTC GAA GAA GAA GCA CGT CGC GTT GCT GAA GAA GCA CGT CGT ATG GCG GAA GAA AAC AAA TGG ACT GAT AAC GCG GAA CCG ACT GAA GAT TCC AGC GAT TAT CAC GTC ACT ACT TCT CAA CAT GCT CGC CAG GCA GAA GAC GAA AGC GAT CGT GAA GTC GAA GGC GGC CGT GGC CGT GGT CGT AAC GCG AAA GCA GCG CGT CCG AAG AAA GGC AAC AAA CAC GCT GAA TCA AAA GCT GAT CGT GAA GAA GCA CGC GCA GCA GTA CGT GGC GGT AAA GGC GGA AAA CGT AAA GGT TCT TCG CTG CAG CAA GGC TTC CAG AAG CCT GCT CAG GCC GTT AAC CGT GAC GTT GTG ATC GGC GAA ACT ATC ACC GTT GGC GAA CTG GCG AAC AAG ATG GCG GTT AAA GGC TCT CAG GTC ATC AAA GCG ATG ATG AAA CTG GGC GCA ATG GCA ACC ATC AAC CAG GTT ATC GAT CAG GAA ACC GCA CAG CTG GTT GCT GAA GAG ATG GGC CAT AAA GTT ATC CTG CGT CGT GAA AAC GAG CTG GAA GAG GCG GTA ATG AGC GAC CGT GAC ACG GGT GCT GCG GCT GAA CCG CGC GCG CCG GTT GTG ACC ATC ATG GGT CAC GTT GAC CAC GGT AAA ACC TCT CTG CTG GAC TAC ATT CGT TCA ACG AAA GTG GCC TCT GGC GAA GCG GGC GGC ATT ACC CAG CAC ATT GGT GCA TAC CAC GTT GAA ACT GAA AAC GGC ATG ATC ACC TTC CTG GAC ACC CCG GGG CAC GCC GCG TTT ACT TCA ATG CGT GCT CGT GGT GCG CAG GCA ACG GAC ATC GTA GTC CTG GTT GTT GCT GCC GAC GAC GGC GTA ATG CCG CAG ACG ATC GAA GCA ATC CAG CAC GCG AAA GCG GCG CAG GTT CCG GTG GTC GTT GCA GTG AAC AAG ATC GAT AAA CCA GAA GCC GAT CCG GAT CGC GTT AAG AAC GAA CTC TCC CAG TAC GGC ATC CTG CCG GAA GAG TGG GGC GGT GAA AGC CAG TTC GTA CAT GTG TCT GCG AAA GCG GGT ACT GGT ATC GAT GAA CTG CTG GAC GCT ATC CTG CTG CAG GCG GAA GTT CTG GAG CTG AAA GCG GTA CGT AAA GGT ATG GCG AGC GGT GCG GTT ATC GAA TCC TTC CTC GAT AAA GGT CGT GGT CCG GTT GCT ACC GTT CTG GTA CGT GAA GGT ACT CTG CAC AAG GGC GAT ATC GTT CTG TGT GGC TTC GAA TAC GGT CGT GTT CGT GCG ATG CGT AAC GAA CTG GGT CAG GAA GTG CTG GAA GCG GGT CCG TCC ATT CCG GTG GAA ATC CTC GGC CTG TCC GGC GTA CCG GCT GCG GGT GAT GAA GTT ACC GTT GTA CGT GAC GAG AAG AAA GCG CGT GAA GTT GCA CTG TAT CGT CAG GGT AAA TTC CGC GAA GTT AAA CTG GCG CGT CAG CAG AAA TCT AAA CTC GAG AAC ATG TTC GCC AAC ATG ACC GAA GGC GAA GTT CAC GAA GTG AAC ATC GTC CTG AAG GCA GAC GTA CAG GGT TCT GTG GAA GCG ATC TCC GAC TCC TTG CTG AAA CTG TCT ACT GAC GAA GTT AAA GTG AAG ATC ATC GGT TCT GGC GTA GGT GGT ATC ACC GAA ACC GAC GCC ACC CTG GCT GCG GCG TCC AAC GCC ATC CTG GTT GGC TTC AAC GTA CGT GCT GAT GCC TCT GCA CGT AAA GTG ATT GAA GCG GAA AGC CTG GAT CTG CGT TAC TAC TCC GTC ATC TAT AAC CTG ATT GAC GAA GTG AAA GCG GCG ATG AGC GGT ATG CTG TCT CCG GAA CTG AAA CAG CAG ATT ATC GGT CTG GCG GAA GTT CGT GAC GTG TTC AAA TCG CCG AAA TTT GGT GCC ATC GCA GGC TGT ATG GTT ACC GAA GGT GTG GTT AAA CGT CAC AAC CCG ATC CGC GTT CTG CGT GAC AAC GTG GTT ATC TAC GAA GGC GAG CTG GAG TCC CTG CGC CGC TTC AAA GAT GAC GTT AAC GAA GTC CGT AAC GGT ATG GAA TGT GGT ATC GGC GTT AAG AAC TAC AAC GAC GTC CGC ACT GGC GAT GTG ATC GAA GTA TTC GAA ATC ATC GAG ATC CAA CGT ACC ATC GCT 
CFT073                               ATG ACA GAT GTA ACG ATT AAA ACG CTG GCC GCA GAG CGA CAG ACC TCC GTG GAA CGC CTG GTA CAG CAA TTT GCT GAT GCA GGT ATC CGG AAG TCT GCT GAC GAC TCT GTG TCT GCA CAA GAG AAA CAG ACT TTG ATT GAC CAC CTG AAT CAG AAA AAT TCA GGC CCG GAC AAA TTG ACG CTG CAA CGT AAA ACA CGC AGC ACC CTT AAC ATT CCT GGT ACC GGT GGA AAA AGC AAA TCG GTA CAA ATC GAA GTC CGC AAG AAA CGC ACC TTT GTG AAA CGC GAT CCG CAA GAG GCT GAG CGC CTT GCA GCG GAA GAG CAA GCG CAG CGT GAA GCG GAA GAG CAA GCC CGT CGT GAG GCA GAA GAA TCG GCT AAA CGC GAG GCG CAA CAA AAA GCT GAA CGT GAG GCC GCA GAA CAG GCT AAG CGT GAA GCT GCT GAA CAA GCG AAA CGT GAA GCT GCG GAA AAA GAC AAA GTG AGC AAT CAA CAA GAC GAT ATG ACT AAA AAC GCC CAG GCT GAA AAA GCC CGC CGT GAG CAG GAA GCT GCA GAG CTC AAG CGT AAA GCC GAA GAA GAA GCG CGT CGT AAA CTC GAA GAA GAA GCA CGT CGC GTT GCT GAA GAA GCA CGT CGT ATG GCG GAA GAA AAC AAA TGG ACT GAT AAC GCG GAA CCG ACT GAA GAT TCC AGC GAT TAT CAC GTC ACT ACT TCT CAA CAT GCT CGC CAG GCA GAA GAC GAA AGC GAT CGT GAA GTC GAA GGC GGC CGT GGC CGT GGT CGT AAC GCG AAA GCA GCG CGT CCG AAG AAG GGC AAC AAA CAC GCT GAA TCA AAA GCT GAT CGT GAA GAA GCT CGC GCA GCA GTA CGT GGC GGT AAG GGC GGA AAA CGT AAA GGT TCT TCG CTG CAG CAA GGC TTC CAG AAG CCA GCT CAG GCC GTT AAC CGT GAC GTT GTG ATC GGC GAA ACC ATC ACC GTT GGC GAA CTG GCG AAC AAG ATG GCG GTT AAA GGC TCT CAG GTC ATC AAA GCG ATG ATG AAA CTG GGC GCA ATG GCA ACC ATC AAC CAG GTT ATC GAT CAG GAA ACC GCA CAG CTG GTT GCT GAA GAG ATG GGC CAC AAA GTT ATC CTG CGT CGT GAA AAC GAG CTG GAA GAG GCG GTA ATG AGC GAC CGT GAC ACG GGT GCT GCG GCT GAA CCG CGC GCG CCG GTT GTG ACC ATC ATG GGT CAC GTT GAC CAC GGT AAA ACC TCT CTG CTG GAC TAC ATT CGT TCA ACG AAA GTG GCC TCT GGC GAA GCG GGC GGC ATT ACC CAG CAC ATT GGT GCA TAC CAC GTT GAA ACT GAA AAC GGC ATG ATC ACC TTC CTG GAC ACC CCG GGG CAC GCC GCG TTT ACT TCA ATG CGT GCA CGT GGT GCG CAG GCA ACG GAC ATC GTA GTC CTG GTT GTT GCT GCA GAC GAC GGT GTA ATG CCG CAG ACC ATC GAA GCT ATC CAG CAC GCG AAA GCG GCG GGT GTT CCG GTG GTG GTT GCT GTG AAC AAA ATC GAT AAA CCA GAA GCC GAT CCG GAT CGC GTT AAG AAC GAA CTC TCC CAG TAC GGC ATC CTG CCA GAA GAG TGG GGC GGC GAA AGC CAG TTC GTA CAC GTA TCT GCA AAA GCG GGT ACC GGT ATT GAT GAA CTG CTG GAT GCT ATC CTG CTG CAG GCG GAA GTT CTG GAG CTG AAA GCG GTA CGT AAA GGT ATG GCG AGC GGT GCG GTT ATC GAA TCC TTC CTC GAT AAA GGT CGT GGT CCG GTT GCT ACC GTT CTG GTA CGT GAA GGT ACT CTG CAC AAG GGC GAT ATC GTT CTG TGT GGC TTC GAA TAC GGT CGT GTT CGT GCA ATG CGT AAC GAA CTG GGT CAG GAA GTG CTG GAA GCG GGT CCG TCC ATT CCG GTG GAA ATC CTT GGC CTG TCC GGC GTA CCG GCT GCG GGT GAT GAA GTT ACC GTT GTA CGT GAC GAG AAG AAA GCG CGT GAA GTT GCA CTC TAT CGT CAG GGT AAA TTC CGC GAA GTT AAA CTG GCG CGT CAG CAG AAA TCT AAA CTC GAG AAC ATG TTC GCC AAC ATG ACC GAA GGC GAA GTT CAC GAA GTG AAT ATT GTC CTG AAG GCA GAC GTA CAG GGT TCT GTG GAA GCA ATT TCC GAC TCC TTG CTG AAA CTG TCT ACT GAC GAA GTT AAA GTG AAG ATC ATC GGT TCT GGC GTA GGT GGT ATC ACC GAA ACC GAC GCT ACC CTG GCT GCG GCG TCC AAC GCC ATC CTG GTT GGC TTC AAC GTA CGT GCT GAT GCC TCT GCA CGT AAA GTG ATT GAA GCG GAA AGC CTG GAT CTG CGT TAC TAC TCC GTC ATC TAT AAC CTG ATC GAC GAA GTG AAA GCG GCG ATG AGC GGT ATG CTG TCT CCG GAA CTG AAA CAG CAG ATT ATC GGT CTG GCG GAA GTT CGT GAC GTG TTC AAA TCA CCG AAA TTT GGT GCT ATC GCA GGT TGT ATG GTT ACC GAA GGT GTG GTT AAA CGT CAC AAC CCG ATC CGC GTT CTG CGC GAC AAC GTG GTT ATC TAC GAA GGC GAG CTG GAG TCC CTG CGA CGC TTC AAA GAT GAC GTT AAC GAA GTC CGT AAC GGT ATG GAA TGT GGT ATC GGC GTT AAG AAC TAC AAC GAT GTC CGC ACT GGC GAT GTG ATC GAA GTA TTC GAA ATC ATC GAG ATC CAA CGT ACT ATC GCT 
O157                                 ATG ACA GAT GTA ACG ATT AAA ACG CTG GCC GCA GAG CGA CAG ACC TCC GTG GAA CGC CTG GTA CAG CAA TTT GCT GAT GCA GGT ATC CGG AAG TCT GCT GAC GAC TCT GTG TCT GCA CAA GAG AAA CAG ACT TTG ATT GAC CAC CTG AAT CAG AAA AAT TCA GGC CCG GAC AAA TTG ACG CTG CAA CGT AAA ACA CGC AGC ACC CTT AAC ATT CCT GGT ACC GGT GGA AAA AGC AAA TCG GTA CAA ATC GAA GTC CGC AAG AAA CGC ACC TTT GTG AAA CGC GAT CCG CAA GAG GCT GAA CGC CTT GCA GCG GAA GAG CAA GCG CAG CGT GAA GCG GAA GAG CAA GCC CGT CGT GAG GCA GAA GAA TCG GCT AAA CGC GAG GCG CAA CAA AAA GCT GAA CGT GAG GCC GCA GAA CAA GCT AAG CGT GAA GCT GCT GAA CAA GCG AAA CGT GAA GCT GCG GAA AAA GAC AAA GTG AGC AAT CAA CAA GAC GAT ATG ACT AAA AAC GCC CAG GCT GAA AAA GCC CGC CGT GAG CAG GAA GCT GCA GAG CTC AAG CGT AAA GCC GAA GAA GAA GCG CGT CGT AAA CTC GAA GAA GAA GCA CGT CGC GTT GCT GAA GAA GCA CGT CGT ATG GCG GAA GAA AAC AAA TGG ACT GAT AAC GCG GAA CCG ACT GAG GAT TCC AGC GAT TAT CAC GTC ACT ACT TCT CAA CAT GCT CGC CAG GCA GAA GAC GAA AGC GAT CGT GAA GTC GAA GGC GGC CGT GGC CGT GGT CGT AAC GCG AAA GCA GCG CGT CCG AAG AAA GGC AAC AAA CAC GCT GAA TCA AAA GCT GAT CGT GAA GAA GCA CGC GCA GCA GTA CGT GGC GGT AAG GGC GGA AAA CGT AAA GGT TCT TCG CTG CAG CAA GGC TTC CAG AAG CCT GCT CAG GCC GTT AAC CGT GAC GTT GTG ATC GGC GAA ACT ATC ACC GTT GGC GAA CTG GCG AAC AAG ATG GCG GTT AAA GGC TCT CAG GTC ATC AAA GCG ATG ATG AAA CTG GGC GCA ATG GCA ACC ATC AAC CAG GTT ATC GAT CAG GAA ACC GCA CAG CTG GTT GCT GAA GAG ATG GGC CAC AAA GTT ATC CTG CGT CGT GAA AAC GAG CTG GAA GAG GCG GTA ATG AGC GAC CGT GAC ACG GGA GCT GCG GCT GAA CCG CGC GCT CCG GTT GTG ACC ATC ATG GGT CAC GTT GAC CAC GGT AAA ACC TCT CTG CTG GAC TAC ATT CGT TCA ACG AAA GTG GCC TCT GGC GAA GCG GGC GGC ATT ACC CAG CAC ATT GGT GCA TAC CAC GTT GAA ACT GAA AAC GGC ATG ATC ACC TTC CTG GAC ACC CCG GGG CAC GCC GCG TTT ACT TCA ATG CGT GCA CGT GGT GCG CAG GCA ACT GAC ATC GTA GTC CTG GTT GTT GCT GCC GAC GAC GGC GTA ATG CCG CAG ACC ATC GAA GCA ATC CAG CAC GCG AAA GCG GCG CAG GTA CCG GTG GTG GTT GCA GTG AAC AAG ATC GAT AAA CCA GAA GCC GAT CCG GAT CGC GTT AAG AAC GAA CTC TCC CAG TAC GGC ATC CTG CCG GAA GAG TGG GGC GGT GAA AGC CAG TTC GTA CAC GTA TCT GCG AAA GCG GGT ACC GGT ATC GAT GAA CTG CTG GAC GCT ATC CTG CTG CAG GCG GAA GTT CTG GAG CTG AAA GCG GTA CGT AAA GGT ATG GCG AGC GGT GCG GTT ATC GAA TCC TTC CTC GAT AAA GGT CGT GGT CCG GTT GCT ACC GTT CTG GTA CGT GAA GGT ACT CTG CAC AAG GGC GAT ATC GTT CTG TGT GGC TTC GAA TAC GGT CGT GTT CGT GCG ATG CGT AAC GAA CTG GGT CAG GAA GTG CTG GAA GCG GGT CCG TCC ATT CCG GTG GAA ATC CTC GGC TTG TCC GGT GTT CCG GCT GCG GGT GAT GAA GTT ACC GTT GTA CGT GAC GAG AAG AAA GCG CGT GAA GTT GCA CTC TAT CGT CAG GGT AAA TTC CGC GAA GTT AAA CTG GCG CGT CAG CAG AAA TCT AAA CTC GAG AAC ATG TTC GCC AAC ATG ACC GAA GGC GAA GTT CAC GAA GTG AAT ATC GTC CTG AAG GCA GAC GTA CAG GGT TCT GTC GAA GCG ATC TCC GAC TCC TTG CTG AAA CTG TCT ACT GAC GAA GTT AAA GTG AAG ATC ATC GGT TCT GGC GTA GGT GGT ATC ACC GAA ACC GAC GCC ACC TTG GCT GCG GCG TCC AAC GCC ATC CTG GTT GGC TTC AAC GTA CGT GCT GAT GCC TCT GCA CGT AAA GTG ATT GAA GCG GAA AGC CTG GAT CTG CGT TAC TAC TCC GTC ATC TAT AAC CTG ATC GAC GAA GTG AAA GCG GCG ATG AGC GGT ATG CTG TCT CCG GAA CTG AAA CAG CAG ATT ATC GGT CTG GCG GAA GTT CGT GAC GTG TTC AAA TCG CCG AAA TTT GGT GCC ATC GCA GGC TGT ATG GTT ACC GAA GGT GTG GTT AAA CGT CAC AAC CCG ATC CGC GTT CTG CGT GAC AAC GTG GTT ATC TAT GAA GGC GAG CTG GAG TCC CTG CGC CGC TTC AAA GAT GAC GTT AAC GAA GTC CGT AAC GGT ATG GAA TGT GGT ATC GGC GTT AAG AAC TAC AAC GAC GTC CGC ACT GGC GAT GTG ATC GAA GTA TTC GAA ATC ATC GAG ATC CAA CGT ACC ATC GCT 


CODONML (in paml 3.14, January 2004)    H:\users\mt269\runpaml\NEWdna80\b3168.phy   Model: One dN/dS ratio 
Codon frequencies: F3x4
Site-class models:  PositiveSelection

ns = 5  	ls = 890
# site patterns = 109
   21    2   21   14    5    9   50   40   10   22   19    1   28   19   11
   19   75   17   14    4   26   32   33    1   13   15   25   11    3   12
    3    4   28   17   44   10    2   25    1    2    3    9    1   35    1
    1    2    2    1    1    1    1    1    5    1   35    2    1    3    1
    1    3    1   10    1    1    1    1    1    7    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    3    1    3
    2    3    1    2    1    1    1    1    1    2    1    1    1    1    1
    1    1    1    1

K12                                  ATG ACA GAT GTA ACG ATT AAA CTG GCC GCA GAG CGA CAG ACC TCC GTG GAA CGC CAA TTT GCT GGT ATC CGG AAG TCT GAC ACT TTG CAC AAT TCA GGC CCG CGT AGC CTT AAC CCT GGA TCG GTC GAA GCG GCG CAG CGT GAA GCG GAG CAA GCC CAA CTC GCT GTT TGG GAA TAT CAT AAA GCA AAA TTC CCT ACT CAT GGT GCG TAC GGG GCT ACG GCC GGT GTG ACC CAG GTA GTG AAG CCA GCT CCG GGT CAC GTA GCG ACC ATC GAC TGT CTC CTG GGC GTA CTC AAT GTC GCC TTT ATT TCG GGC CGT TAC CGC ACC ATT 
S2457T                               ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C .GT --- --- --- --- --- --- ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..A ..G ... ..T ..C ... ... ..C ... ... ..T ..G ... ..T ... ... ... ... ... ... ... ..G ..C ..G ... ..C ... ... ... ... ... ... ... ..C 
Shig4337                             ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C .GT --- --- --- --- --- --- ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..A ..G ... ..T ..C ... ... ..C ... ... ..T ..G ... ..T ... ... ... ... ... ... ... ..G ..C ..G ... ..C ... ... ... ... ... ... ... ..C 
CFT073                               ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... ..G ... ..C ... ... ... ... ... ..G ..T ..G ... ..A ..C ..C ... ... ... ... ..A ... ..A ... ..A ... GGT ..T ... ..A ... ..C ..A ..C ... ... ..A ... ..T ..T ... ..T ... ... ... ... ... ..G ..T ..C ..C ..A ..T ..C ... ..A ..T ..C 
O157                                 ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ..G ... ... ... ... ..G ... ... ... ..C ..A ..T ... ... ..A ..T ... ..C ..A ... ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... T.. ..T ..T ... ... ... ... ..C ..C ... ... ... ..T ... ... ..C 



Codon usage in sequences
--------------------------------------------------------------------------------------------------
Phe TTT  5  4  4  4  4 | Ser TCT 15 15 15 15 15 | Tyr TAT  3  3  3  3  4 | Cys TGT  3  3  3  3  3
    TTC 10 11 11 11 11 |     TCC 11 11 11 11 11 |     TAC  8  8  8  8  7 |     TGC  0  0  0  0  0
Leu TTA  0  0  0  0  0 |     TCA  4  4  4  5  4 | *** TAA  0  0  0  0  0 | *** TGA  0  0  0  0  0
    TTG  3  3  3  3  5 |     TCG  4  4  4  3  4 |     TAG  0  0  0  0  0 | Trp TGG  2  2  2  2  2
--------------------------------------------------------------------------------------------------
Leu CTT  2  2  2  3  2 | Pro CCT  2  2  2  1  2 | His CAT  2  3  3  1  1 | Arg CGT 47 46 46 46 47
    CTC  7  6  6  6  7 |     CCC  0  0  0  0  0 |     CAC 13 12 12 14 14 |     CGC 18 18 18 18 18
    CTA  0  0  0  0  0 |     CCA  1  1  1  3  1 | Gln CAA 16 15 15 15 16 |     CGA  1  1  1  2  1
    CTG 42 43 43 42 40 |     CCG 18 18 18 17 18 |     CAG 30 29 29 30 30 |     CGG  1  1  1  1  1
--------------------------------------------------------------------------------------------------
Ile ATT 11 10 10 12  9 | Thr ACT 12 13 13 12 13 | Asn AAT  4  3  3  4  4 | Ser AGT  0  0  0  0  0
    ATC 36 37 37 35 38 |     ACC 22 20 20 22 22 |     AAC 25 26 26 25 25 |     AGC 10 10 10 10 10
    ATA  0  0  0  0  0 |     ACA  2  2  2  2  2 | Lys AAA 52 52 52 51 51 | Arg AGA  0  0  0  0  0
Met ATG 21 21 21 21 21 |     ACG  6  7  7  6  5 |     AAG 14 14 14 15 15 |     AGG  0  0  0  0  0
--------------------------------------------------------------------------------------------------
Val GTT 35 36 36 36 36 | Ala GCT 29 28 28 31 27 | Asp GAT 21 21 21 23 21 | Gly GGT 35 34 34 36 34
    GTC 10 10 10  9 10 |     GCC 14 15 15 13 16 |     GAC 27 27 27 25 27 |     GGC 30 31 31 30 30
    GTA 17 16 16 17 17 |     GCA 25 25 25 27 26 | Glu GAA 79 77 77 78 78 |     GGA  2  2  2  2  3
    GTG 21 21 21 21 20 |     GCG 41 39 39 38 40 |     GAG 20 19 19 21 21 |     GGG  1  1  1  1  1
--------------------------------------------------------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: K12            
position  1:    T:0.07640    C:0.22472    A:0.24157    G:0.45730
position  2:    T:0.24719    C:0.23146    A:0.35281    G:0.16854
position  3:    T:0.25393    C:0.27079    A:0.22360    G:0.25169

#2: S2457T         
position  1:    T:0.07710    C:0.22336    A:0.24376    G:0.45578
position  2:    T:0.24943    C:0.23129    A:0.35034    G:0.16893
position  3:    T:0.25283    C:0.27438    A:0.22109    G:0.25170

#3: Shig4337       
position  1:    T:0.07710    C:0.22336    A:0.24376    G:0.45578
position  2:    T:0.24943    C:0.23129    A:0.35034    G:0.16893
position  3:    T:0.25283    C:0.27438    A:0.22109    G:0.25170

#4: CFT073         
position  1:    T:0.07640    C:0.22360    A:0.24157    G:0.45843
position  2:    T:0.24719    C:0.23146    A:0.35169    G:0.16966
position  3:    T:0.25843    C:0.26629    A:0.22697    G:0.24831

#5: O157           
position  1:    T:0.07865    C:0.22247    A:0.24157    G:0.45730
position  2:    T:0.24719    C:0.23146    A:0.35281    G:0.16854
position  3:    T:0.24944    C:0.27640    A:0.22360    G:0.25056

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT      21 | Ser S TCT      75 | Tyr Y TAT      16 | Cys C TGT      15
      TTC      54 |       TCC      55 |       TAC      39 |       TGC       0
Leu L TTA       0 |       TCA      21 | *** * TAA       0 | *** * TGA       0
      TTG      17 |       TCG      19 |       TAG       0 | Trp W TGG      10
------------------------------------------------------------------------------
Leu L CTT      11 | Pro P CCT       9 | His H CAT      10 | Arg R CGT     232
      CTC      32 |       CCC       0 |       CAC      65 |       CGC      90
      CTA       0 |       CCA       7 | Gln Q CAA      77 |       CGA       6
      CTG     210 |       CCG      89 |       CAG     148 |       CGG       5
------------------------------------------------------------------------------
Ile I ATT      52 | Thr T ACT      63 | Asn N AAT      18 | Ser S AGT       0
      ATC     183 |       ACC     106 |       AAC     127 |       AGC      50
      ATA       0 |       ACA      10 | Lys K AAA     258 | Arg R AGA       0
Met M ATG     105 |       ACG      31 |       AAG      72 |       AGG       0
------------------------------------------------------------------------------
Val V GTT     179 | Ala A GCT     143 | Asp D GAT     107 | Gly G GGT     173
      GTC      49 |       GCC      73 |       GAC     133 |       GGC     152
      GTA      83 |       GCA     128 | Glu E GAA     389 |       GGA      11
      GTG     104 |       GCG     197 |       GAG     100 |       GGG       5
------------------------------------------------------------------------------

(Ambiguity data are not used in the counts.)


Codon position x base (3x4) table, overall

position  1:    T:0.07713    C:0.22350    A:0.24244    G:0.45692
position  2:    T:0.24808    C:0.23139    A:0.35160    G:0.16892
position  3:    T:0.25350    C:0.27244    A:0.22327    G:0.25079

Codon frequencies under model, for use in evolver:
  0.00492833  0.00529664  0.00434079  0.00487571
  0.00459678  0.00494032  0.00404877  0.00454771
  0.00698478  0.00750678  0.00000000  0.00000000
  0.00335574  0.00360653  0.00000000  0.00331992
  0.01428062  0.01534785  0.01257812  0.01412815
  0.01331992  0.01431536  0.01173196  0.01317772
  0.02023953  0.02175209  0.01782663  0.02002345
  0.00972380  0.01045049  0.00856456  0.00961999
  0.01549108  0.01664878  0.01364428  0.01532570
  0.01444896  0.01552877  0.01272639  0.01429470
  0.02195509  0.02359586  0.01933767  0.02172069
  0.01054802  0.01133631  0.00929052  0.01043541
  0.02919529  0.03137714  0.02571471  0.02888359
  0.02723124  0.02926632  0.02398481  0.02694052
  0.04137769  0.04446997  0.03644476  0.04093593
  0.01987934  0.02136498  0.01750938  0.01966710



Nei & Gojobori 1986. dN/dS (dN, dS)
(Pairwise deletion)
(Note: This matrix is not used in later m.l. analysis.
Use runmode = -2 for ML pairwise comparison.)

K12                 
S2457T               0.0312 (0.0008 0.0241)
Shig4337             0.0312 (0.0008 0.0241)-1.0000 (0.0000 0.0000)
CFT073               0.0199 (0.0012 0.0625) 0.0292 (0.0020 0.0689) 0.0292 (0.0020 0.0689)
O157                 0.0000 (0.0000 0.0295) 0.0195 (0.0008 0.0385) 0.0195 (0.0008 0.0385) 0.0194 (0.0012 0.0642)


TREE #  1:  ((1, (2, 3)), (4, 5));   MP score: -1
This is a rooted tree.  Please check!
check convergence..
lnL(ntime:  8  np: 13):  -3892.303258     +0.000000
   6..7     7..1     7..8     8..2     8..3     6..9     9..4     9..5  
  0.00463  0.00556  0.01470  0.00000  0.00000  0.00113  0.04077  0.01156  2.23503  0.99753  0.00000  0.00000 17.23961
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   0.07837

((1: 0.005565, (2: 0.000004, 3: 0.000004): 0.014699): 0.004629, (4: 0.040774, 5: 0.011564): 0.001130);

((K12: 0.005565, (S2457T: 0.000004, Shig4337: 0.000004): 0.014699): 0.004629, (CFT073: 0.040774, O157: 0.011564): 0.001130);

Detailed output identifying parameters

kappa (ts/tv) =  2.23503


dN/dS for site classes (K=3)

p:   0.99753  0.00000  0.00247
w:   0.00000  1.00000 17.23961

dN & dS for each branch

 branch           t        S        N    dN/dS       dN       dS   S*dS   N*dN

   6..7       0.005    778.9   1891.1   0.0426   0.0002   0.0048    3.7    0.4
   7..1       0.006    778.9   1891.1   0.0426   0.0002   0.0058    4.5    0.5
   7..8       0.015    778.9   1891.1   0.0426   0.0006   0.0152   11.9    1.2
   8..2       0.000    778.9   1891.1   0.0426   0.0000   0.0000    0.0    0.0
   8..3       0.000    778.9   1891.1   0.0426   0.0000   0.0000    0.0    0.0
   6..9       0.001    778.9   1891.1   0.0426   0.0000   0.0012    0.9    0.1
   9..4       0.041    778.9   1891.1   0.0426   0.0018   0.0422   32.9    3.4
   9..5       0.012    778.9   1891.1   0.0426   0.0005   0.0120    9.3    1.0


Positively selected sites (*: P>95%; **: P>99%)

            Pr(w>1)     post mean +- SE for w

   109 Q      1.000**       17.239
   490 Q      1.000**       17.240


Bayes Empirical Bayes (BEB) analysis
Positively selected sites (*: P>95%; **: P>99%)

            Pr(w>1)     post mean +- SE for w

   109 Q      0.571         1.268 +- 0.737
   490 Q      0.760         1.535 +- 0.558



The grid (see ternary graph for p0-p1)

w0:   0.050  0.150  0.250  0.350  0.450  0.550  0.650  0.750  0.850  0.950
w2:   1.500  2.500  3.500  4.500  5.500  6.500  7.500  8.500  9.500 10.500


Posterior on the grid

w0:   1.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000
w2:   0.857  0.119  0.019  0.004  0.001  0.000  0.000  0.000  0.000  0.000

Posterior for p0-p1 (see the ternary graph)

 0.000
 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000

sum of density on p0-p1 =   1.000000
