
seed used = 141397245

K12                                  ATG AGC GGA AAA CCA GCG GCG CGT CAG GGA GAT ATG ACT CAG TAT GGC GGT CCC ATT GTC CAG GGT TCG GCA GGT GTA AGA ATT GGC GCG CCC ACC GGC GTG GCG TGC TCG GTG TGT CCG GGC GGG ATG ACT TCG GGC AAC CCG GTA AAT CCG CTG CTG GGG GCG AAG GTG CTG CCC GGC GAG ACG GAC CTT GCG CTG CCC GGC CCG CTG CCG TTC ATT CTC TCC CGC ACC TAC AGC AGC TAC CGG ACG AAG ACG CCT GCA CCG GTG GGC GTT TTC GGC CCC GGC TGG AAA GCG CCT TCT GAT ATC CGC TTA CAG CTA CGT GAT GAC GGA CTG ATA CTC AAC GAC AAC GGC GGG CGG AGC ATT CAC TTT GAG CCG CTG CTG CCG GGG GAG GCG GTG TAC AGC CGC AGT GAG TCA ATG TGG CTG GTG CGC GGT GGT AAG GCA GCA CAG CCG GAC GGC CAT ACG CTG GCG CGG CTG TGG GGG GCG CTG CCG CCG GAT ATC CGG TTA AGC CCG CAT CTT TAC CTG GCG ACC AAC AGC GCA CAG GGG CCG TGG TGG ATA CTG GGG TGG TCT GAG CGG GTG CCG GGT GCT GAG GAC GTA CTG CCA GCG CCG CTG CCG CCG TAC CGG GTG CTT ACC GGG ATG GCG GAC CGC TTC GGG CGG ACG CTG ACG TAC CGG CGT GAG GCC GCC GGT GAC CTG GCC GGG GAA ATC ACC GGC --- --- --- GTG ACG GAC GGT GCC GGG CGG GAG TTC CGT CTG GTG CTG ACC ACG CAG GCG CAG CGT GCG GAA GAG GCC CGC --- --- --- ACC TCT TCG CTA TCT TCT TCT GAC AGT TCC CGC CCT CTC TCA GCC TCA GCG TTC CCC GAC ACA CTG CCC GGT ACC GAA TAC GGC CCC GAC AGG GGT ATC CGC CTT TCG GCG GTG TGG CTG ATG CAC GAC CCG GCA TAC CCG GAG AGC CTG CCC GCT GCG CCA CTG GTG CGG TAC ACG TAT ACG GAA GCC GGT GAA CTG CTG GCG GTA TAT GAC CGC AGC AAT ACG CAG GTG CGC GCT TTC ACG TAT GAC GCG CAG CAC CCG GGC CGG ATG GTG GCG CAC CGT TAC GCG GGA AGG CCG GAG ATG CGC TAC CGC TAC GAC GAT ACG GGG CGG GTG GTG GAG CAA CTG AAC CCG GCA GGG TTA AGC TAC CGC TAT CTT TAT GAG CAG GAC CGC ATC ACC GTC ACC GAC AGC CTG AAC CGG CGT GAG GTG CTG CAT ACA GAA GGC GGG GCC GGG CTG AAA CGG GTG GTG AAA AAA GAA CTG GCG GAC GGC AGC GTC ACG CGC AGC GGG TAT GAC GCG GCA GGA AGG CTC ACG GCG CAG ACG GAC GCG GCG GGA CGG AGG ACA GAG TAC GGT CTG AAT GTG GTG TCC GGC GAT ATC ACG GAC ATC ACC ACA CCG GAC GGG CGG GAG ACG AAA TTT TAC TAT AAC GAC GGG AAC CAG CTG ACG GCG GTG GTG TCC CCG GAC GGG CTG GAG AGC CGC CGG GAA TAT GAT GAA CCG GGC AGG CTG GTA TCG GAG ACA TCG CGC AGC GGG GAG ACA GTA CGC TAC CGC TAC GAT GAC GCG CAC AGT GAG TTA CCG GCG ACG ACA ACG GAT GCG ACG GGC AGC ACC CGG CAG ATG ACC TGG AGC CGC TAC GGG CAG TTG CTG GCG TTC ACC GAC TGC TCG GGC TAC CAG ACC CGT TAT GAA TAC GAC CGC TTC GGC CAG ATG ACG GCG GTC CAC CGC GAG GAA GGC ATC AGC CTT TAC CGC CGC TAT GAC AAC CGT GGC CGG TTA ACC TCG GTG AAA GAC GCA CAG GGC CGT GAA ACG CGG TAT GAA TAC AAC GCC GCA GGC GAC CTG ACT GCC GTT ATC ACC CCG GAC GGC AAC CGG AGC GAG ACA CAG TAC GAT GCG TGG GGA AAG GCG GTC AGC ACC ACG CAG GGC --- GGG CTG ACG CGC AGT ATG GAG TAC GAT GCT GCC GGA CGT GTC ATC AGC CTG ACC AAC GAG AAC GGC AGC CAC AGC GTC TTC AGT TAC --- --- GAT GCG CTG GAC CGG CTG GTA CAG CAG GGC GGC TTT GAC GGG --- --- CGG ACG CAA CGT TAT CAT TAT GAC CTG ACC GGA AAA CTC ACA CAG AGT GAG GAT GAG GGA CTT GTC ATC CTC TGG TAC TAC GAT GAA TCG GAC CGT ATC ACT CAC CGC ACG GTG AAC GGC GAA CCG GCA GAG CAG TGG CAG TAT GAT GGC CAC GGC TGG CTG ACA GAC ATC AGC CAC CTG AGC GAA GGC CAC CGT GTT GCC GTC CAC TAT GGC TAT GAC GAT AAA GGC CGC CTG ACC GGC GAA TGC CAG ACG GTG GAG AAC CCG GAG ACG GGG GAA CTG CTG TGG CAG CAT GAG ACG AAA CAC GCA TAC AAC GAG CAG GGG CTG GCA AAC CGC GTC ACG CCG GAC AGC CTG CCG CCG GTG GAG TGG CTG ACG TAT GGC AGC GGT TAC CTG GCG GGA ATG AAG CTG GGC GGG ACG CCG CTG GTC GAG TAT ACG CGG GAC AGG CTG CAC CGT GAG ACG GTG CGC AGC TTC GGC AGC ATG GCA GGC AGT AAT GCC GCA TAC GAA CTG ACC AGC ACA TAC ACC CCC GCA GGC CAG TTA CAG AGC CAG CAC CTG AAC AGC CTG GTA TAT GAC CGT GAC TAC GGG TGG AGT GAC AAC GGC GAC CTG GTG CGC ATC AGC GGC CCG CGA CAG ACG CGG GAA TAC GGC TAC AGC GCC ACG GGC AGG CTG GAG AGT GTG CGC ACC CTC GCA CCA GAC CTG GAC ATC CGC ATC CCG TAT GCC ACG GAC CCG GCG GGC AAC CGG CTG CCG GAC CCG GAG CTG CAC CCG GAC AGT ACA CTC ACA GTG TGG CCG GAT AAC CGC ATC GCG GAG GAT GCG CAC TAT GTC TAC CGC CAC GAT GAA TAC GGC AGG CTG ACG GAG AAG ACG GAC CGC ATC CCG GCG GGT GTG ATA CGG ACG GAC GAC GAG CGG ACC CAC CAC TAC CAC TAC GAC AGC CAG CAC CGC CTG GTG TTC TAC ACG CGG ATA CAG CAT GGC GAG CCA CTG GTC GAG AGC CGC TAC CTC TAC GAC CCG CTG GGA CGG CGA ATG GCA AAA CGG GTC TGG CGG CGG GAG CGT GAC CTG ACG GGG TGG ATG TCG CTG TCG CGT AAA CCG GAG GTG ACG TGG TAT GGC TGG GAC GGA GAC AGG CTG ACG ACG GTG CAG ACT GAC ACC ACA CGT ATC CAG ACG GTA TAC GAG CCG GGA AGC TTC ACG CCG CTC ATC CGG GTC GAG ACA GAG AAC GGC GAG CGG GAA AAA GCG CAG CGG CGC AGC CTG GCA GAG ACG CTC CAG CAG GAA GGG AGT GAG AAC GGC CAC GGC GTG GTG TTC CCG GCT GAA CTG GTG CGG CTG CTG GAC AGG CTG GAG GAA GAA ATC CGG GCA GAC CGC GTG AGC AGT GAA AGC CGG GCG TGG CTT GCG CAG TGC GGG CTG ACG GTG GAG CAA CTG GCC AGA CAG GTG GAG CCG GAA TAC ACA CCG GCG CGA AAA GCT CAT CTT TAT CAC TGC GAC CAC CGG GGA CTG CCG CTG GCG CTT ATC AGC GAA GAC GGC AAT ACG GCG TGG AGC GCG GAA TAT GAT GAA TGG GGC AAC CAG CTT AAT GAG GAG AAC CCG CAT CAT GTG TAT CAG CCG TAC CGT CTG CCA GGG CAG CAG CAT GAT GAG GAA TCA GGG CTG TAC TAT AAC CGT CAC CGG TAC TAC GAT CCG TTG CAG GGG CGG TAT ATT ACT CAG GAC CCG ATG GGG TTG AAA GGG GGA TGG AAT TTA TAT CAG TAT CCT TTA AAT CCA CTA CAA CAA ATT GAC CCT ATG GGA TTA TTG CAG ACT TGG GAT GAT GCC AGA TCT GGA GCA TGT ACG GGG GGA GTT TGT GGT GTT CTT TCA CGT ATA ATA GGA CCA AGT AAA TTT GAT AGT ACT GCA GAT GCT GCG TTA GAT GCT TTG AAA GAA ACG CAG AAT AGA TCT CTA TGT AAT GAT ATG GAA TAC TCT GGT ATT GTC TGT AAA GAT ACT AAT GGA AAA TAT TTT GCA TCT AAG GCA GAA ACT GAT AAT TTA AGA AAG GAG TCA TAT CCT CTG AAA AGA AAA TGT CCC ACA GGT ACA GAT AGA GTT GCT GCT TAT CAT ACT CAC GGT GCA GAT AGT CAT GGC GAT TAT GTT GAT GAA TTT TTT TCA AGT AGC GAT AAA AAT CTT GTA AGA AGT AAA GAT AAT AAT CTT GAA GCA TTT TAT CTC GCA ACA CCT GAT GGA CGA TTT GAG GCG CTT AAT AAT AAA GGA GAA TAT ATT TTT ATC AGA AAT AGT GTC CCG GGA TTG AGT TCA GTA TGC ATA CCG TAT CAT GAT 
O157                                 ATG AGC GGA AAA CCA GCG GCG CGT CAG GGA GAT ATG ACT CAG TAT GGC GGT CCC ATT GTC CAG GGT TCG GCA GGT GTA AGA ATT GGC GCG CCA ACT GGC GTG GCG TGC TCG GTG TGC CCG GGC GGG ATG ACT TCG GGC AAC CCG GTA AAT CCG CTG CTG GGG GCG AAG GTG CTG CCC GGC GAG ACG GAC CTT GCG CTG CCC GGC CCG CTG CCG TTC ATT CTC TCC CGC ACC TAC AGC AGC TAC CGG ACC CGG ACG CCT GCG CCG GTG GGG ATT TTT GGC CCC GGC TGG AAA GCG CCT TCT GAT ATC CGC TTA CAG CTA CGC GAT GAT GCA CTG GTA CTC AAT GAC AAC GGC GGG CGG AGC ATT CAC TTT GAG CCG CTG CTG CCG GGG GAG GCG GTG TAC AGC CGC AGC GAG TCA ATG TGG CTG GTG CGC GGT GGT AAG GCA GCG CAG CCG GAC GGC CAC ACG CTG GCG CGG CTG TGG GGG GCG CTG CCG CCG GAT ATC CGG TTA AGC CCG CAT CTT TAC CTG GCG ACC AAC AGC GCA CAG GGG CCG TGG TGG ATA CTG GGG TGG TCA GAG CGG GTG CCG GGT GCT GAG GAC GTA CTG CCA GCG CCG CTG CCG CCG TAC CGG GTG CTT ACC GGG ATG GCG GAC CGC TTC GGG CGG ACG CTG ACG TAC AGG CGT GAG GCC GCC GGT GAC CTG GCC GGG GAA ATC ACC GGC --- --- --- GTG ACG GAC GGT GCC GGG CGG GAG TTC CGT CTG GTG CTG ACC ACG CAG GCG CAG CGG GCG GAA GAG GCC CGT AAA CAG CAC ACC GCT TCT TTA TCT TCC CCT GAC ACC CCC CGC CCT CTT TCA GAC TCA GCG TTC CCC GAC ACA CTG CCC GGT ACC GAA TAC GGT CCC GAC AGA GGT ATC CGC CTT TCG GCG GTG TGG CTG ACG CAC GAC CCG GCA TAC CCG GAA AGC CTG CCC GGT GCG CCA CTG GCG CGG TAC ACG TAT ACG GAA GCC GGT GAA CTG CTG GCG GTA TAT GAC CGC AGC AAT ACG CAG GTG CGC GCT TTC ACG TAT GAC GCG CAG CAT CCG GGC CGG ATG GTG GCG CAC CGT TAC GCG GGA AGG CCG GAG ATG CGC TAC CGC TAC GAC GAT ACC GGG CGG GTG GTG GAG CAG CTG AAC CCG GCA GGC CTG AGT TAC CGC TAC CAG TAT GAG CAG GAC CGC ATC ACC GTC ACG GAC AGC CTG AAC CGG CGT GAG GTG CTG CAT ACA GAA GGC GGG GCC GGG CTG AAG CGG GTG GTG AAA AAA GAA CTG GCG GAC GGC AGC GTC ACG CAC AGC GGG TAT GAC GCG GCA GGA AGG CTC ACG GCG CAG ACG GAC GCG GCG GGA CGG CGG ACA GAG TAC GGT CTG AAT GTG GTG TCC GGC GAT ATC ACG GAC ATC ACC ACA CCG GAC GGG CGG GAG ACG AAA TTT TAC TAT AAC GAC GGG AAC CAG CTG ACG GCG GTG GTG TCC CCG GAC GGG CTG GAG AGC CGC CGG GCA TAT GAT GAA CCG GGC AGG CTG GTA TCG GAG ACA TCG CGC TGT GGG GAC GTC ATC CGG TAT GCT TAT GAT AAT CCG CAC AGT GAA TTA CCG GCC ACG ACA ACA GAT GCG ACG GGC AGC ACC CGG CAG ATG ACC TGG AGC CGC TAC GGG CAG TTG CTG GCG TTC ACC GAC TGC TCG GGC TAC CAG ACC CGT TAT GAA TAC GAC CGC TTT GGT CAG ATG ACG GCG GTC CAC CGT GAG GAA GGT ATC AGC CGT TAC CGC CGC TAT GAC AAC CGT GGC CGG TTA ACC TCG GTG AAA GAC GCA CAG GGC CAT GAA ACG CGG TAT GAG TAC AAC GCC GCA GGC GAC CTG ACT GCC GTT ATC ACT CCG GAC GGC AAC CGG AGC GAG ACA CAG TAC GAT GCG TGG GGA AAA GCG GTC AGC ACC ACG CAG GGC --- GGG CTG ACG CGC AGT ATG GAG TAT GAC CTC GCC GGA CGC ATC ACC ACG CTG ACC AAC GAG AAC GGC AGC CGG AGT GAG TTT ACC TAC --- --- GAT GCG CTT GAC CGG CTG GTA CAG CAG CGC GGC TTT GAC GGG --- --- CGG ACG CAA CGT TAC CAC TAT GAC CTG ACC GGA AAA CTC ACG CAG AGT GAA GAT GAG GGG CTT GTC ACC CTC TGG CAC TAC GAC GAA TCG GAC CGC CTC ACT CAC CGC ACG GTG AAC GGC GAA CCG GCA GAG CAG TGG CAG TAC GAC GAG CAC GGC TGG CTG ACA GAA ATC AGC CAC CTG AGC GAA GGC CAT CAG GTG GCG GTG CAT TAC GGT TAT GAT GAT AAG GGC CGC CTG GCC GGG GAG CGC CAG ACG GTG CAT AAC CCG GAG ACG GGG GAA CTG CTG TGG CAG CAT GAG ACA GAG CAC GCA TAC AAC GAA CAG GGT CTG GCA AAC CGC GTC ACG CCG GAC AGC CTG CCG CGG GTG GAG TGG CTG ACC TAC GGC AGC GGT TAT CTT GCG GGG ATG AAG CTG GGC GGG ACG CCG CTG GTG GAG TTC ACG CGC GAC AGG CTG CAC CGC GAG ACG GTG CGC AGC TTC GGC --- --- --- --- --- AAT AAC GCA TAC GAA CTG ACC AGC ACA TAC ACT CCC GCA GGC CAT TTA CAG AGC CAG CGC CTG AAC AGC CAG GTG TAT GAC CGT GAC TAC GAC TGG AAT GAC AAT GGC GAC CTG GTG CGC ATC AGC GGC CCG CGA CAG ACG TGG GAA TAT GGC TAC AGT GCC ACG GGC AGG CTG GAG AGC GTG CGC ACC CTT GCA TCA GAC CTG GAT ATC CGC ATC CCG TAT GCG ACC GAC CCG GCG GGA AAC CGG CTG CCG GAC CCG GAG CTA CAC CCG GAC AGC ACG CTC ACG GCG TGG CCG GAT AAC CGC ATC GCG GAG GAT GCG CAC TAT GTC TAC CGA CAC GAT GAA TAC GGC AGG CTG ACG GAG AAG ACG GAC CGC ATC CCG GCG GGT GTG ATA CGG ACG GAC GAC GAG CGG ACC CAC CAC TAC CAC TAC GAC AGC CAG CAC CGC CTG GTG TTC TAC ACG CGG ATA CAG CAT GGC GAG CCA CTG GTC GAG AGC CGC TAC CTC TAC GAC CCG CTG GGA CGG CGA ATG GCA AAA CGG GTC TGG CGG CGG GAG CGT GAC CTG ACG GGG TGG ATG TCG CTG TCG CGT AAA CCG GAG GTG ACG TGG TAT GGC TGG GAC GGA GAC AGG CTG ACG ACG GTG CAG ACT GAC ACC ACA CGT ATC CAG ACG GTA TAC GAG CCG GGA AGC TTC ACG CCG CTC ATC CGG GTC GAG ACA GAG AAC GGC GAG CGG GAA AAA GCG CAG CGG CGC AGC CTG GCA GAG ACG CTC CAG CAG GAA GGG AGT GAG AAC GGC CAC GGC GTG GTG TTC CCG GCT GAA CTG GTG CGG CTG CTG GAC AGG CTG GAG GAA GAA ATC CGG GCA GAC CGC GTG AGC AGT GAA AGC CGG GCG TGG CTT GCG CAG TGC GGG CTG ACG GTG GAG CAA CTG GCC AGA CAG GTG GAG CCG GAA TAC ACA CCG GCG CGA AAA GTT CAT TTT TAC CAC TGC GAC CAC CGG GGC CTG CCG CTG GCG CTC ATC AGC GAA GAC GGC AAT ACG GCG TGG CGC GGG GAG TAT GAT GAA TGG GGC AAC CAG CTT AAT GAA GAG AAC CCG TAT TAC CTG CAC CAG CCA TAC CGT CTG CCG GGG CAG CAG CAT GAT GAG GAA TCA GGG CTG TAC TAT AAC CGG AAC CGG TAC TAT GAC CCG CTA CAG GGG AGG TAT ATT ACA CAA GAC CCC ATT GGG CTG GCG GGG GGA TGG AAT CTG TAT AAT TAC CCA CTG AAT CCG ATA ATA AGG ATG GAT CCT TTG GGT TTG TAT AAT --- --- --- --- --- --- --- --- --- --- --- --- --- TTA TAT CAA TTA TTA TAT --- --- --- GAT GTT TGG CAT GAT GAT TCA TAT GGA ACA TCA TCA ATT GAT ATT ACT GGC AGT GGA GAT CTA ATA TCA TTA GGT --- --- --- --- --- --- --- --- --- --- --- --- GGT CAT GCA GGA CTT GGC GTT GCG TTT GCT AAA AAG AAA GGT GAA ATG TTA TCT GAT ATT TGT ATT TAT GCT ACA GCA TGC GGA CAT GCA GGA ATT GGT GGT GGG ATA AAT GCG GCT ATC ACA TAT TCT TAC TCC AAG TCT TTA CCT ACA TCG GGA GTC AGC AAT TCA GTA GGT GTA ACG GTT GGC GGC GGA GTT GGG GGG CAT TTT GCG TAT ACT TAT GTA GTG GAT GTT GAT AAT CCA GAA TCA TCG ACA GAA TCT GTT GGT ATC GGT GCA GGT GTT GAC GCT TCA GTT ATG ACT CTG GCT TGT AGA ACG TGG CAA GAA 
EDL933                               ATG AGC GGA AAA CCA GCG GCG CGT CAG GGA GAT ATG ACT CAG TAT GGC GGT CCC ATT GTC CAG GGT TCG GCA GGT GTA AGA ATT GGC GCG CCA ACT GGC GTG GCG TGC TCG GTG TGC CCG GGC GGG ATG ACT TCG GGC AAC CCG GTA AAT CCG CTG CTG GGG GCG AAG GTG CTG CCC GGC GAG ACG GAC CTT GCG CTG CCC GGC CCG CTG CCG TTC ATT CTC TCC CGC ACC TAC AGC AGC TAC CGG ACC CGG ACG CCT GCG CCG GTG GGG ATT TTT GGC CCC GGC TGG AAA GCG CCT TCT GAT ATC CGC TTA CAG CTA CGC GAT GAT GCA CTG GTA CTC AAT GAC AAC GGC GGG CGG AGC ATT CAC TTT GAG CCG CTG CTG CCG GGG GAG GCG GTG TAC AGC CGC AGC GAG TCA ATG TGG CTG GTG CGC GGT GGT AAG GCA GCG CAG CCG GAC GGC CAC ACG CTG GCG CGG CTG TGG GGG GCG CTG CCG CCG GAT ATC CGG TTA AGC CCG CAT CTT TAC CTG GCG ACC AAC AGC GCA CAG GGG CCG TGG TGG ATA CTG GGG TGG TCA GAG CGG GTG CCG GGT GCT GAG GAC GTA CTG CCA GCG CCG CTG CCG CCG TAC CGG GTG CTT ACC GGG ATG GCG GAC CGC TTC GGG CGG ACG CTG ACG TAC AGG CGT GAG GCC GCC GGT GAC CTG GCC GGG GAA ATC ACC GGC --- --- --- GTG ACG GAC GGT GCC GGG CGG GAG TTC CGT CTG GTG CTG ACC ACG CAG GCG CAG CGG GCG GAA GAG GCC CGT AAA CAG CAC ACC GCT TCT TTA TCT TCC CCT GAC ACC CCC CGC CCT CTT TCA GAC TCA GCG TTC CCC GAC ACA CTG CCC GGT ACC GAA TAC GGT CCC GAC AGA GGT ATC CGC CTT TCG GCG GTG TGG CTG ACG CAC GAC CCG GCA TAC CCG GAG AGC CTG CCC GCT GCG CCA CTG GTG CGG TAC ACG TAT ACG GAA GCC GGT GAA CTG CTG GCG GTA TAT GAC CGC AGC AAT ACG CAG GTG CGC GCT TTC ACG TAT GAC GCG CAG CAC CCG GGC CGG ATG GTG GGG CAC CGT TAT GCG GGA AGG CCG GAG ATG CGC TAC CGC TAC GAC GAT GCG GGG CGG GTG GTG GAG CAA CTG AAC CCG GCA GGC CTG AGT TAC CAC TAC CAG TAT GAG CAG GAC CGC ATC ACC GTC ACG GAC AGC CTG AAC CGG CGT GAG GTG CTG CAT ACA GAA GGC GGG GCC GGG CTG AAG CGG GTG GTG AAA AAA GAA CTG GCG GAC GGC AGC GTC ACG CAC AGC GGG TAT GAC GCG GCA GGA AGG CTA ACG GCG CAG ACG GAC GCG GCG GGA CGG CGG ACA GAG TAT GGT CTG AAT GTG GTA TCC GGC GAT ATC ACG GAC ATC ACC ACA CCG GAC GGG CGG GAG ACG AAA TTT TAC TAT AAC GAC GGG AAC CAG CTG ACG GCG GTG GTG TCC CCG GAC GGG CTG GAG AGC CGC CGG GCA TAT GAT GAA CCG GGC AGG CTG GTA TCG GAG ACA TCG CGC AGC GGG GAG ACA GTA CGC TAC CGC TAC GAT GAT GCG TAC AGT GAG TTA CCG GCG ACG ACA ACA GAT GCG ACG GGC AGC ACC CGG CAG ATG ACC TGG AGC CGC TAC GGT CAG TTG CTG GCG TTC ACC GAC TGC TCG GGC TAC CAG ACC CGC TAT GAA TAC GAC CGC TTC GGC CAG ATG ACG GCG GTC CAC CGC GAG GAA GGC ATC AGC CTT TAC CGC CGC TAT GAC AAC CGT GGC CGG TTA ATC TCG GTG AAA GAC GCA CAG GGC CAT GAA ACG CGG TAT GAG TAC AAC GCC GCA GGC GAC CTG ACT GCC GTT ATC ACC CCG GAC GGC AAC CGG AGC GAG ACA CAG TAC GAT GCG TGG GGA AAG GCG GTC AGC ACC ACG CAG GGC --- GGG CTG ACG CGC AGT ATG GAA TAC GAC CTT GCC GGA CGC ATC ACC ACG CTG ACC AAC GAG AAC GGC AGC CGG AGT GAG TTT ACC TAC --- --- GAT GCG CTT GAC CGG CTG GTA CAG CAG CGC GGC TTT GAC GGG --- --- CGG ACG CAA CGT TAC CAC TAT GAC CTG ACC GGA AAA CTC ACG CAG AGT GAA GAT GAG GGG CTT GTC ACC CTC TGG CAC TAC GAC GAA TCG GAC CGC CTC ACT CAC CGC ACG GTG AAC GGC GAA CCG GCA GAG CAG TGG CAG TAC GAC GAG CAC GGC TGG CTG ACA GAA ATC AGC CAC CTG AGC GAA GGC CAT CAG GTG GCG GTG CAT TAC GGT TAT GAT GAT AAG GGC CGC CTG GCC GGG GAG CGC CAG ACG GTG CAT AAC CCG GAG ACG GGG GAA CTG CTG TGG CAG CAT GAG ACA GAG CAC GCA TAC AAC GAA CAG GGT CTG GCA AAC CGC GTC ACG CCG GAC AGC CTG CCG CGG GTG GAG TGG CTG ACC TAC GGC AGC GGT TAT CTT GCG GGG ATG AAG CTG GGC GGG ACG CCG CTG GTG GAG TTC ACG CGC GAC AGG CTG CAC CGC GAG ACG GTG CGC AGC TTC GGC --- --- --- --- --- AAT AAC GCA TAC GAA CTG ACC AGC ACA TAC ACT CCC GCA GGC CAT TTA CAG AGC CAG CGC CTG AAC AGC CAG GTG TAT GAC CGT GAC TAC GAC TGG AAT GAC AAT GGC GAC CTG GTG CGC ATC AGC GGC CCG CGA CAG ACG CGG GAA TAT GGC TAC AGC GCC ACG GGC AGG CTG GAG AGC GTG CGC ACC CTT GCA TCA GAC CTG GAT ATC CGC ATC CCG TAT GCG ACC GAC CCG GCG GGA AAC CGG CTG CCG GAC CCG GAG CTA CAC CCG GAC AGC ACG CTC ACG GCG TGG CCG GAT AAC CGC ATC GCG GAG GAT GCG CAC TAT GTC TAC CGA CAC GAT GAA TAC GGC AGG CTG ACG GAG AAG ACG GAC CGC ATC CCG GCG GGT GTG ATA CGG ACG GAC GAC GAG CGG ACC CAC CAC TAC CAC TAC GAC AGC CAG CAC CGC CTG GTG TTC TAC ACG CGG ATA CAG CAT GGC GAG CCA CTG GTC GAG AGC CGC TAC CTC TAC GAC CCG CTG GGC CGC CGG ACG GGG AAA CGG GTG TGG CGT CGC GGG CGT GAC CTG ACG GGA TGG ATG TCG CTG TCG CGG AAA CCG GAG GTG ACG TGG TAC GGG TGG GAC GGC GAC CGG CTG ACG ACG GTA CAG ACC GAC ACC ACG CGT ATC CAG ACG GTA TAC GAG CCG GGA AGC TTC GCG CCG CTC ATC CGC ATC GAA ACA GAC AAC GGT GAG CGG GAG AAA GCG CAG CGC CGC AGC CTG GCG GAG AAG CTG CAG CAG GAA GGG AGC GAG GAC GGG CAC GGT GTG GTA TTT CCG GCT GAA CTG GTG CGG CTG CTG GAC AGA CTG GAG GAA GAA ATC CGG GCA GAC CGC GTG AGC AGT GAA AGC CGG GCG TGG CTT GCG CAG TGC GGG CTG ACG GTG GAG CAA CTG GCC AGA CAG GTG GAG CCG GAA TAC ACA CCG GCG AGA AAA GTT CAT CTT TAC CAC TGC GAC CAC CGG GGC CTG CCG CTG GCG CTC ATC AGC GAA GAC GGC AAT ACG GCG TGG AGC GGG GAG TAT GAT GAA TGG GGC AAC CAG CTG AAT GAG GAG AAC CCG CAT CAC CTG CAC CAG CCG TAC CGG CTG CCG GGG CAG CAG TAT GAT AAG GAG TCG GGG CTG TAC TAC AAC CGG AAC CGG TAC TAC GAT CCG TTG CAG GGG CGG TAT ATC ACT CAG GAC CCG ATA GGG CTG GAG GGG GGA TGG AGT CTG TAT GCG TAT CCG CTG AAT CCG GTG AAT GGT ATT GAT CCA TTA GGG TTA AGT CCC --- --- --- --- --- --- --- --- --- --- --- --- --- GCA GAT GTA GCG CTA ATA AGA AGA AAA GAT CAA CTA AAC CAT CAA AGA GCA TGG GAT ATA TTA TCT GAT ACT TAT GAA GAT ATG AAG AGA TTA AAT TTA GGT --- --- --- --- --- --- --- --- --- --- --- --- GGG ACT GAT CAA TTT TTC CAT TGT ATG GCA TTT TGT CGA GTG TCT AAA TTA AAT GAC GCT GGT GTT AGC CGA TCG GCG AAA GGG --- CTG GGT TAT GAA AAA GAG ATT AGA GAT TAC GGG TTA AAT CTG TTC GGT ATG TAC GGC AGA AAA GTA AAG CTA TCC CAT TCT GAA ATG ATT GAA GAT AAT AAA AAA GAC TTG GCT GTA AAT GAC CAT GGG TTG ACA TGT CCA TCA ACA ACA GAT TGC TCA GAT AGA TGT AGT GAT TAT ATT AAT CCA GAG CAT AAA GAA ACG ATA AAG GCT TTA CAA GAT GCT GGC TAT CTC AAG 


CODONML (in paml 3.14, January 2004)    /home/melissa/melissashare/runpaml/NEWdna80/b0497.phy   Model: One dN/dS ratio 
Codon frequencies: F3x4
Site-class models:  PositiveSelection

ns = 3  	ls = 1437
# site patterns = 415
   12   35   10   11    4   44   10   45   19    4   19   42   14    9    4
    9   11   15    7    2    1    2   36    4    1   50   30   23    7   76
    4   43   44   57    6    9    7    3   32   20   38   33    3    1    3
    2    2    1    2   24    2   19    5    1    4    4    1    1    2   19
    3    3    3    2    5    3    1    3    1   12   26    8    2    1    1
    1    1    1    1    2    1    1    2    1    2    1   11    2    1    1
    3    1    1    1    1    2    6    1    1    1    3    2    1    6    1
    1    2    1    1    1    3    1    1    1    1    1    1    4    1    1
    1    1    4    1    2    1    1    1    1    2    1    1    1    1    3
    1    1    1    2    3    1    1    2    1    1    1    2    1    2    3
    2    2    1    1    1    1    2    1    1    2    2    1    1    1    1
    1    1    2    1    1    1    2    2    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    2    4    1    1    1
    1    1    1    1    2    2    2    1    1    1    1    1    1    2    2
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    2    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    4    1    1    2    2    2    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1

K12                                  ATG AGC GGA AAA CCA GCG CGT CAG GAT ACT TAT GGC GGT CCC ATT GTC TCG GCA GTA AGA CCC ACC GTG TGC TGT CCG GGG AAC AAT CTG AAG GAG ACG GAC CTT TTC CTC TCC CGC ACC TAC CGG ACG AAG CCT GCA GGC GTT TTC TGG TCT ATC TTA CTA CGT GAC GGA ATA AAC CAC TTT AGT TCA CAT CAT ATA TCT GCT CGG GCC GAA --- CGT CGC --- --- --- TCT TCG CTA TCT TCT AGT TCC CTC GCC ACA GGC AGG ATG GAG GCT GTG CAC GCG TAC AGG ACG CAA GGG TTA AGC CGC TAT CTT ACC AAA CGC CTC AGG GTG GAA AGC GAG ACA GTA CGC TAC CGC GAC GCG CAC AGT GCG ACG GGG TTG CGT TTC GGC CGC CTT ACC CGT GAA GTT ACC AAG GAG GAT GCT GTC ATC AGC CAC GTC CTG GGC CAA ACA GAG GGA TAC ATC GGC GAC CAC CGT GTT GCC GTC ACC TGC GAG AAA GGG CCG TAC TAT CGG AGC ATG GCA GGC AGT GCC CAG CAC CTG GTA GGG AGT CGA CGG AGC CCA GGC CTG GTG CGC GGA CGG CGA ATG GCA GTC CGG GAG GGG CGT TAT GGC AGG ACT ACA ACG GTC GAG GGC GAA GCA ACG CTC AGT AAC TTC AGG CGA GCT CTT GGA CTT AGC GCG CTT CAT CAT GTG TAT CCG CCA CAT GAG TCA CAC GAT TTG CGG ATT ACT CAG CCG ATG TTG AAA AAT CAG TAT CCT CTA CAA CAA ATT CCT ATG GGA TTA TTG CAG ACT TGG GAT GCC AGA TCT GGA TGT ACG GGG GTT TGT GGT GTT CTT TCA CGT ATA ATA GGA CCA AGT AAA TTT GAT AGT ACT GCA GAT GCT GCG TTA GCT TTG AAA GAA ACG CAG AAT AGA TCT TGT AAT GAA TAC GGT ATT GTC AAA ACT AAT GGA AAA TAT TTT GCA TCT AAG GCA GAA ACT GAT AAT TTA AGA AAG GAG TCA TAT CCT CTG AAA AGA AAA TGT CCC ACA GGT ACA GAT AGA GTT GCT GCT TAT CAT ACT CAC GGT GCA GAT AGT CAT GGC GAT TAT GTT GAT GAA TTT TTT TCA AGT AGC GAT AAA AAT CTT GTA AGA AGT AAA GAT AAT AAT CTT GAA GCA TTT TAT CTC GCA ACA CCT GAT GGA CGA TTT GAG GCG CTT AAT AAT AAA GGA GAA TAT ATT TTT ATC AGA AAT AGT GTC CCG GGA TTG AGT TCA GTA TGC ATA CCG TAT CAT GAT 
O157                                 ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ..T ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C CG. ... ..G ..G A.. ..T ... ... ... ... ... ..C ..T .C. G.. ..T ... ... ..C ... ..C ... ... ..A ... A.. ... ... --- ..G ..T AAA CAG CAC G.. ..T T.. ..C C.. .CC C.. ..T .A. ... ..T ..A .C. ..A .G. .C. ..T ... ... ... ..C ..G ..C C.G ..T ... ..C .AG ..G ..G .A. ... C.. ... .C. T.T ..C GTC A.C ..G ..T GCT A.T C.. ... ... ..C ..A ... ... ... ..T ..T ..T .G. ... .A. ..G ... ..T ..A ... ..C CTC A.. .C. .CG .GG .AG ..T C.. ... ..G ..A ..G C.. C.. .AG ..A ..T .AG ..G ..G ..G G.. C.. C.T G.G ..T .G. ..T .TC ..C --- --- --- --- --- AA. ..T .G. .A. ..G .AC .A. ... T.. ..T T.. ..A ..A .C. ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .T. T.. ..C ..C C.. .G. ... T.. T.C C.. C.C ..A ..G ... ... ... A.. ..C C.A A.. ... ..A ..A ..C ..T C.. GCG ... A.T ..C ..A A.. AT. AGG ..G ... T.. ..T ..G .AT A.T --- --- --- --- --- --- --- --- --- --- T.A .A. CAA T.A T.A .AT --- --- --- .AT GTT T.G C.T GA. ... TCA TA. .G. ACA T.A T.A A.T AT. ACT GGC AGT GGA G.T CTA .T. ..A G.. --- --- --- --- --- --- --- GG. C.. .C. GG. CT. GGC .TT G.G TTT ..T A.. .AG A.A GG. GA. .TG TTA TCT GAT AT. TG. A.T T.T GCT .C. GCA TG. GG. CA. G.. .GA .TT .G. .G. .GG ATA A.. G.G GCT ATC A.. T.. TC. T.C TC. A.G .C. T.A CC. AC. .CG GGA GTC ..C .AT TCA GT. GG. G.A ACG GTT G.C GGC .GA GT. GGG GGG C.T TTT GCG ... ACT TAT GT. GTG ... .TT GAT AA. CCA .AA TCA TCG .CA G.. TCT .TT GG. ..C GG. GCA G.T GT. GAC .CT T.A .TT A.. .C. CTG .CT ..T .G. A.. .GG ..A ..A 
EDL933                               ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ..T ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C CG. ... ..G ..G A.. ..T ... ... ... ... ... ..C ..T .C. G.. ..T ... ... ..C ... ..C ... ... ..A ... A.. ... ... --- ..G ..T AAA CAG CAC G.. ..T T.. ..C C.. .CC C.. ..T .A. ... ..T ..A .C. ... ... ... ... .G. ..T ... G.. ... ..C C.G ..T .A. ..C .AG ..G ..G .A. ..A C.. ..A .C. ... ... ... ... ... ... ... ..T ... T.. ... ... ..A ..T ... ..C ... ... ... ... .T. .A. ..G ... ... ... ..A ..C CT. A.. .C. .CG .GG .AG ..T C.. ... ..G ..A ..G C.. C.. .AG ..A ..T .AG ..G ..G ..G G.. C.. C.T G.G ..T .G. ..T .TC ..C --- --- --- --- --- AA. ..T .G. .A. ..G .AC .A. ... ... ... T.. ..A ..A .C. ..A ..C ..C ..G .C. .GG ..G ..T .G. ..A ..G ..C ..G C.. ..C ..G G.. A.. ..C ..T ..G ..G .A. ..G ..C G.. ..T ..A A.. .T. ... ..C ..C ... .G. ..G ... ..C C.. C.C ... ..G T.. A.. ..G A.. ... ... ... ..C ... ... ... ..A C.. G.G .G. GC. ... ..G G.G A.T GGT ... ..A T.A ..G ... AGT .CC --- --- --- --- --- --- --- --- --- --- .CA GA. .TA .CG ..A AT. A.A .G. .A. .AT .A. CTA ..C CA. C.A ..A G.A TGG ... ATA TTA .CT A.. .AT G.. ..T .T. A.. .GA TT. AA. G.. --- --- --- --- --- --- --- GGG .C. .AT C.. .T. ..C CAT .G. .T. ... TTT TG. CGA GTG .CT .A. TTA A.T GAC GC. GG. G.T .GC C.. TCG GCG AAA GGG --- CTG .G. TAT .AA AAA .AG AT. AGA GA. T.. ..G TT. A.. CTG TTC ..T ATG ..C .GC AGA A.. G.A AAG CT. TCC CAT TC. G.. .TG A.. .A. GAT .A. ... A.A G.C TTG GC. .T. AAT GAC C.. GGG TTG ... TG. CCA TC. AC. ACA ..T TGC TCA G.. .GA TGT A.T ..T ... ... AA. CCA GAG C.. .AA .AA A.. AT. AA. GC. .T. CA. GAT GCT GGC ... .TC A.G 



Codon usage in sequences
--------------------------------------------------------------------------
Phe TTT 10  9  8 | Ser TCT 10  7  6 | Tyr TAT 37 36 29 | Cys TGT  6  3  4
    TTC 13 11 13 |     TCC  4  5  5 |     TAC 48 49 53 |     TGC  6  6  6
Leu TTA 11 12 14 |     TCA  8 13  7 | *** TAA  0  0  0 | *** TGA  0  0  0
    TTG  6  3  4 |     TCG 12 13 13 |     TAG  0  0  0 | Trp TGG 25 27 25
--------------------------------------------------------------------------
Leu CTT 15 12 13 | Pro CCT  7  6  4 | His CAT 13 16 16 | Arg CGT 22 16 12
    CTC 12 12 10 |     CCC 11 11 11 |     CAC 27 26 28 |     CGC 39 42 48
    CTA  4  4  6 |     CCA  8  8  8 | Gln CAA  5  5  7 |     CGA  4  4  4
    CTG 81 82 85 |     CCG 55 53 55 |     CAG 50 50 50 |     CGG 42 45 45
--------------------------------------------------------------------------
Ile ATT  8 12  9 | Thr ACT 11 11  9 | Asn AAT 18 17 17 | Ser AGT 19  9  9
    ATC 23 23 23 |     ACC 26 29 29 |     AAC 26 26 26 |     AGC 43 39 43
    ATA  7  7  7 |     ACA 19 20 17 | Lys AAA 24 15 20 | Arg AGA  9  4 12
Met ATG 18 16 16 |     ACG 54 54 53 |     AAG  8  8 13 |     AGG 10 11  7
--------------------------------------------------------------------------
Val GTT  7 10  3 | Ala GCT 10 10  9 | Asp GAT 38 30 36 | Gly GGT 18 30 25
    GTC 17 13  9 |     GCC 17 14 13 |     GAC 63 65 67 |     GGC 57 52 50
    GTA 11 11 15 |     GCA 27 23 20 | Glu GAA 38 38 36 |     GGA 24 20 12
    GTG 42 44 44 |     GCG 50 55 57 |     GAG 57 54 58 |     GGG 36 40 45
--------------------------------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: K12            
position  1:    T:0.13745    C:0.27700    A:0.22651    G:0.35905
position  2:    T:0.19986    C:0.23072    A:0.31697    G:0.25245
position  3:    T:0.17461    C:0.30295    A:0.13955    G:0.38289

#2: O157           
position  1:    T:0.13897    C:0.28080    A:0.21562    G:0.36461
position  2:    T:0.20129    C:0.23782    A:0.31160    G:0.24928
position  3:    T:0.16762    C:0.30301    A:0.13181    G:0.39756

#3: EDL933         
position  1:    T:0.13376    C:0.28755    A:0.22175    G:0.35694
position  2:    T:0.19957    C:0.22604    A:0.32618    G:0.24821
position  3:    T:0.14950    C:0.31044    A:0.13233    G:0.40773

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT      27 | Ser S TCT      23 | Tyr Y TAT     102 | Cys C TGT      13
      TTC      37 |       TCC      14 |       TAC     150 |       TGC      18
Leu L TTA      37 |       TCA      28 | *** * TAA       0 | *** * TGA       0
      TTG      13 |       TCG      38 |       TAG       0 | Trp W TGG      77
------------------------------------------------------------------------------
Leu L CTT      40 | Pro P CCT      17 | His H CAT      45 | Arg R CGT      50
      CTC      34 |       CCC      33 |       CAC      81 |       CGC     129
      CTA      14 |       CCA      24 | Gln Q CAA      17 |       CGA      12
      CTG     248 |       CCG     163 |       CAG     150 |       CGG     132
------------------------------------------------------------------------------
Ile I ATT      29 | Thr T ACT      31 | Asn N AAT      52 | Ser S AGT      37
      ATC      69 |       ACC      84 |       AAC      78 |       AGC     125
      ATA      21 |       ACA      56 | Lys K AAA      59 | Arg R AGA      25
Met M ATG      50 |       ACG     161 |       AAG      29 |       AGG      28
------------------------------------------------------------------------------
Val V GTT      20 | Ala A GCT      29 | Asp D GAT     104 | Gly G GGT      73
      GTC      39 |       GCC      44 |       GAC     195 |       GGC     159
      GTA      37 |       GCA      70 | Glu E GAA     112 |       GGA      56
      GTG     130 |       GCG     162 |       GAG     169 |       GGG     121
------------------------------------------------------------------------------

(Ambiguity data are not used in the counts.)


Codon position x base (3x4) table, overall

position  1:    T:0.13673    C:0.28175    A:0.22133    G:0.36019
position  2:    T:0.20024    C:0.23152    A:0.31825    G:0.25000
position  3:    T:0.16398    C:0.30545    A:0.13460    G:0.39597

Codon frequencies under model, for use in evolver:
  0.00461738  0.00860087  0.00378999  0.01114977
  0.00533867  0.00994444  0.00438203  0.01289151
  0.00733863  0.01366979  0.00000000  0.00000000
  0.00576489  0.01073836  0.00000000  0.01392072
  0.00951484  0.01772346  0.00780987  0.02297587
  0.01100119  0.02049209  0.00902987  0.02656500
  0.01512241  0.02816876  0.01241261  0.03651668
  0.01187948  0.02212810  0.00975079  0.02868585
  0.00747423  0.01392238  0.00613492  0.01804833
  0.00864181  0.01609724  0.00709327  0.02086771
  0.01187917  0.02212752  0.00975053  0.02868510
  0.00933173  0.01738238  0.00765957  0.02253371
  0.01216363  0.02265741  0.00998402  0.02937201
  0.01406375  0.02619679  0.01154366  0.03396030
  0.01933226  0.03601053  0.01586810  0.04668238
  0.01518655  0.02828824  0.01246526  0.03667157



Nei & Gojobori 1986. dN/dS (dN, dS)
(Pairwise deletion)
(Note: This matrix is not used in later m.l. analysis.
Use runmode = -2 for ML pairwise comparison.)

K12                 
O157                 0.4657 (0.1051 0.2257)
EDL933               0.4560 (0.1034 0.2267) 0.5951 (0.0882 0.1482)


TREE #  1:  (1, (2, 3));   MP score: -1
This is a rooted tree.  Please check!
lnL(ntime:  4  np:  9):  -8758.023452     +0.000000
   4..1     4..5     5..2     5..3  
  1.11026  0.92606  0.77742  0.82659  3.30150  0.75585  0.14021  0.00000 61.30806
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   3.64034

(1: 1.110263, (2: 0.777422, 3: 0.826594): 0.926062);

(K12: 1.110263, (O157: 0.777422, EDL933: 0.826594): 0.926062);

Detailed output identifying parameters

kappa (ts/tv) =  3.30150


dN/dS for site classes (K=3)

p:   0.75585  0.14021  0.10395
w:   0.00000  1.00000 61.30806

dN & dS for each branch

 branch           t        S        N    dN/dS       dN       dS   S*dS   N*dN

   4..1       1.110   1068.5   3242.5   6.5129   0.4683   0.0719   76.8 1518.6
   4..5       0.926   1068.5   3242.5   6.5129   0.3906   0.0600   64.1 1266.7
   5..2       0.777   1068.5   3242.5   6.5129   0.3279   0.0504   53.8 1063.4
   5..3       0.827   1068.5   3242.5   6.5129   0.3487   0.0535   57.2 1130.6


Positively selected sites (*: P>95%; **: P>99%)

            Pr(w>1)     post mean +- SE for w

   374 T      0.527         32.755
   391 L      0.570         35.405
   512 S      0.539         33.481
   515 T      0.962*        59.000
   519 R      0.984*        60.321
   650 A      0.819         50.408
   656 S      0.518         32.221
   666 V      0.571         35.452
  1248 K      0.876         53.844
  1255 Q      0.999**       61.242
  1261 L      0.914         56.096
  1262 Q      0.997**       61.116
  1263 Q      0.999**       61.247
  1270 L      1.000**       61.303
  1271 Q      0.999**       61.253
  1285 V      0.996**       61.048
  1286 C      0.621         38.421
  1287 G      1.000**       61.289
  1288 V      0.998**       61.157
  1290 S      1.000**       61.307
  1291 R      0.841         51.602
  1295 P      1.000**       61.300
  1296 S      1.000**       61.302
  1297 K      0.949         58.261
  1298 F      0.989*        60.646
  1299 D      0.849         52.183
  1300 S      0.999**       61.267
  1301 T      1.000**       61.297
  1302 A      0.971*        59.568
  1303 D      0.996**       61.088
  1304 A      1.000**       61.287
  1305 A      0.981*        60.153
  1306 L      0.998**       61.171
  1308 A      0.604         37.417
  1309 L      1.000**       61.305
  1310 K      0.937         57.502
  1311 E      0.972*        59.635
  1312 T      0.993**       60.906
  1313 Q      0.938         57.561
  1314 N      1.000**       61.302
  1315 R      0.900         55.301
  1316 S      0.997**       61.150
  1331 T      0.975*        59.827
  1332 N      0.941         57.754
  1333 G      0.982*        60.244
  1334 K      0.981*        60.180
  1335 Y      0.812         49.992
  1336 F      0.979*        60.021
  1337 A      1.000**       61.284
  1338 S      0.998**       61.201
  1339 K      0.996**       61.078
  1341 E      1.000**       61.304
  1342 T      1.000**       61.300
  1343 D      0.999**       61.261
  1344 N      0.997**       61.125
  1345 L      1.000**       61.306
  1346 R      0.914         56.151
  1347 K      0.988*        60.570
  1348 E      1.000**       61.295
  1349 S      0.998**       61.213
  1350 Y      1.000**       61.288
  1351 P      0.992**       60.824
  1352 L      0.967*        59.301
  1353 K      0.998**       61.203
  1354 R      1.000**       61.294
  1355 K      0.975*        59.816
  1356 C      0.997**       61.120
  1357 P      1.000**       61.306
  1358 T      0.911         55.969
  1359 G      0.902         55.415
  1360 T      0.996**       61.038
  1362 R      1.000**       61.299
  1363 V      0.974*        59.723
  1364 A      0.999**       61.271
  1365 A      0.897         55.076
  1366 Y      0.991**       60.739
  1367 H      0.990**       60.708
  1368 T      0.986*        60.441
  1369 H      0.997**       61.108
  1370 G      0.998**       61.186
  1371 A      0.998**       61.170
  1373 S      1.000**       61.307
  1374 H      0.878         53.976
  1375 G      0.986*        60.445
  1376 D      0.945         57.976
  1378 V      1.000**       61.281
  1379 D      1.000**       61.307
  1380 E      0.735         45.322
  1381 F      0.999**       61.238
  1382 F      1.000**       61.307
  1383 S      0.999**       61.272
  1384 S      0.987*        60.496
  1385 S      0.898         55.160
  1386 D      0.980*        60.104
  1387 K      0.747         46.080
  1388 N      0.999**       61.271
  1389 L      0.967*        59.339
  1390 V      0.995**       61.027
  1391 R      0.998**       61.204
  1392 S      0.887         54.492
  1393 K      0.958*        58.804
  1394 D      0.975*        59.827
  1395 N      0.912         56.024
  1396 N      1.000**       61.300
  1397 L      0.999**       61.276
  1398 E      0.998**       61.195
  1399 A      1.000**       61.307
  1400 F      1.000**       61.299
  1402 L      1.000**       61.307
  1403 A      1.000**       61.307
  1404 T      0.836         51.402
  1405 P      1.000**       61.307
  1406 D      0.998**       61.189
  1407 G      1.000**       61.295
  1408 R      1.000**       61.307
  1409 F      1.000**       61.295
  1410 E      1.000**       61.282
  1411 A      1.000**       61.299
  1412 L      0.962*        59.020
  1413 N      1.000**       61.294
  1414 N      0.982*        60.208
  1415 K      1.000**       61.290
  1416 G      1.000**       61.300
  1417 E      0.776         47.812
  1418 Y      0.763         47.036
  1420 F      0.999**       61.271
  1421 I      0.999**       61.232
  1422 R      0.985*        60.402
  1423 N      0.992**       60.849
  1424 S      0.991**       60.774
  1425 V      0.992**       60.823
  1426 P      0.829         50.985
  1427 G      0.984*        60.344
  1428 L      0.707         43.636
  1429 S      0.785         48.333
  1430 S      0.896         55.024
  1431 V      1.000**       61.295
  1432 C      0.964*        59.127
  1433 I      1.000**       61.284
  1434 P      0.999**       61.239
  1435 Y      0.777         47.872
  1436 H      0.942         57.830
  1437 D      0.755         46.539


Bayes Empirical Bayes (BEB) analysis
Positively selected sites (*: P>95%; **: P>99%)

            Pr(w>1)     post mean +- SE for w

    84 K      0.843         8.944 +- 3.614
    91 V      0.588         6.342 +- 4.975
   110 G      0.780         8.283 +- 4.178
   112 I      0.641         6.877 +- 4.846
   268 S      0.742         7.903 +- 4.413
   273 S      0.720         7.676 +- 4.532
   275 S      0.536         5.811 +- 5.052
   318 A      0.751         7.986 +- 4.367
   391 L      0.822         8.718 +- 3.833
   498 E      0.735         7.830 +- 4.454
   512 S      0.521         5.643 +- 5.071
   515 T      0.988*        10.383 +- 1.053
   516 V      0.744         7.923 +- 4.404
   519 R      0.988*        10.385 +- 1.042
   522 D      0.580         6.253 +- 5.003
   581 L      0.774         8.223 +- 4.219
   650 A      0.983*        10.333 +- 1.253
   656 S      0.831         8.816 +- 3.736
   664 H      0.755         8.060 +- 4.285
   666 V      0.780         8.298 +- 4.147
   668 S      0.536         5.811 +- 5.052
   737 G      0.604         6.519 +- 4.921
   752 R      0.712         7.611 +- 4.552
   773 E      0.936         9.889 +- 2.342
   830 Y      0.552         5.979 +- 5.032
   851 A      0.899         9.527 +- 2.896
   880 G      0.630         6.814 +- 4.823
   915 P      0.811         8.602 +- 3.942
  1024 A      0.721         7.687 +- 4.529
  1165 A      0.628         6.743 +- 4.885
  1167 L      0.770         8.185 +- 4.243
  1205 H      0.632         6.787 +- 4.875
  1206 H      0.502         5.457 +- 5.071
  1218 H      0.619         6.657 +- 4.910
  1245 M      0.605         6.526 +- 4.930
  1248 K      0.966*        10.169 +- 1.750
  1255 Q      0.999**       10.495 +- 0.217
  1261 L      0.993**       10.431 +- 0.807
  1262 Q      0.998**       10.484 +- 0.392
  1263 Q      0.999**       10.492 +- 0.277
  1267 M      0.665         7.115 +- 4.772
  1270 L      1.000**       10.499 +- 0.090
  1271 Q      0.998**       10.483 +- 0.403
  1285 V      0.993**       10.435 +- 0.787
  1286 C      0.981*        10.322 +- 1.294
  1287 G      1.000**       10.496 +- 0.193
  1288 V      0.993**       10.429 +- 0.823
  1290 S      1.000**       10.499 +- 0.078
  1291 R      0.772         8.134 +- 4.359
  1292 I      0.795         8.439 +- 4.068
  1293 I      0.771         8.192 +- 4.240
  1294 G      0.836         8.870 +- 3.689
  1295 P      1.000**       10.497 +- 0.165
  1296 S      1.000**       10.497 +- 0.172
  1297 K      0.981*        10.321 +- 1.298
  1298 F      0.998**       10.482 +- 0.411
  1299 D      0.971*        10.222 +- 1.608
  1300 S      0.999**       10.488 +- 0.337
  1301 T      0.999**       10.495 +- 0.215
  1302 A      0.987*        10.371 +- 1.104
  1303 D      0.997**       10.474 +- 0.495
  1304 A      0.999**       10.492 +- 0.273
  1305 A      0.993**       10.429 +- 0.822
  1306 L      0.999**       10.492 +- 0.284
  1308 A      0.984*        10.350 +- 1.188
  1309 L      1.000**       10.499 +- 0.111
  1310 K      0.994**       10.446 +- 0.716
  1311 E      0.997**       10.475 +- 0.486
  1312 T      0.997**       10.472 +- 0.517
  1313 Q      0.990*        10.401 +- 0.967
  1314 N      1.000**       10.498 +- 0.142
  1315 R      0.984*        10.342 +- 1.219
  1316 S      0.992**       10.427 +- 0.834
  1318 C      0.666         7.132 +- 4.764
  1331 T      0.991**       10.411 +- 0.920
  1332 N      0.982*        10.325 +- 1.284
  1333 G      0.997**       10.473 +- 0.507
  1334 K      0.998**       10.481 +- 0.430
  1335 Y      0.989*        10.395 +- 0.998
  1336 F      0.986*        10.364 +- 1.132
  1337 A      0.999**       10.493 +- 0.251
  1338 S      0.996**       10.461 +- 0.612
  1339 K      0.997**       10.476 +- 0.479
  1341 E      1.000**       10.498 +- 0.123
  1342 T      1.000**       10.499 +- 0.119
  1343 D      1.000**       10.497 +- 0.174
  1344 N      0.999**       10.489 +- 0.317
  1345 L      1.000**       10.498 +- 0.124
  1346 R      0.990*        10.404 +- 0.952
  1347 K      0.997**       10.471 +- 0.525
  1348 E      1.000**       10.497 +- 0.168
  1349 S      0.998**       10.478 +- 0.460
  1350 Y      1.000**       10.499 +- 0.103
  1351 P      0.999**       10.489 +- 0.327
  1352 L      0.992**       10.420 +- 0.871
  1353 K      0.998**       10.485 +- 0.383
  1354 R      0.999**       10.493 +- 0.256
  1355 K      0.989*        10.393 +- 1.004
  1356 C      0.995**       10.456 +- 0.647
  1357 P      1.000**       10.500 +- 0.051
  1358 T      0.983*        10.337 +- 1.239
  1359 G      0.985*        10.360 +- 1.148
  1360 T      0.999**       10.487 +- 0.357
  1361 D      0.645         6.914 +- 4.841
  1362 R      1.000**       10.498 +- 0.129
  1363 V      0.997**       10.470 +- 0.529
  1364 A      1.000**       10.498 +- 0.138
  1365 A      0.970*        10.212 +- 1.637
  1366 Y      0.995**       10.453 +- 0.666
  1367 H      0.998**       10.483 +- 0.404
  1368 T      0.993**       10.430 +- 0.813
  1369 H      0.997**       10.473 +- 0.506
  1370 G      0.997**       10.474 +- 0.496
  1371 A      0.999**       10.492 +- 0.271
  1372 D      0.964*        10.153 +- 1.790
  1373 S      1.000**       10.499 +- 0.078
  1374 H      0.969*        10.202 +- 1.663
  1375 G      0.987*        10.373 +- 1.097
  1376 D      0.990**       10.409 +- 0.923
  1377 Y      0.668         7.148 +- 4.758
  1378 V      0.998**       10.477 +- 0.471
  1379 D      1.000**       10.500 +- 0.053
  1380 E      0.978*        10.291 +- 1.400
  1381 F      0.999**       10.488 +- 0.338
  1382 F      1.000**       10.500 +- 0.064
  1383 S      0.999**       10.489 +- 0.319
  1384 S      0.987*        10.374 +- 1.093
  1385 S      0.977*        10.277 +- 1.444
  1386 D      0.990**       10.409 +- 0.929
  1387 K      0.979*        10.296 +- 1.383
  1388 N      1.000**       10.497 +- 0.159
  1389 L      0.986*        10.365 +- 1.129
  1390 V      0.998**       10.484 +- 0.395
  1391 R      1.000**       10.496 +- 0.204
  1392 S      0.981*        10.314 +- 1.322
  1393 K      0.996**       10.466 +- 0.569
  1394 D      0.998**       10.477 +- 0.470
  1395 N      0.975*        10.265 +- 1.483
  1396 N      1.000**       10.499 +- 0.090
  1397 L      0.999**       10.493 +- 0.256
  1398 E      0.998**       10.484 +- 0.384
  1399 A      1.000**       10.499 +- 0.075
  1400 F      1.000**       10.497 +- 0.162
  1401 Y      0.632         6.788 +- 4.871
  1402 L      1.000**       10.499 +- 0.083
  1403 A      1.000**       10.499 +- 0.094
  1404 T      0.990*        10.404 +- 0.952
  1405 P      1.000**       10.500 +- 0.060
  1406 D      0.997**       10.473 +- 0.509
  1407 G      0.999**       10.493 +- 0.250
  1408 R      1.000**       10.500 +- 0.045
  1409 F      1.000**       10.496 +- 0.197
  1410 E      0.999**       10.489 +- 0.319
  1411 A      1.000**       10.498 +- 0.142
  1412 L      0.992**       10.424 +- 0.852
  1413 N      1.000**       10.497 +- 0.163
  1414 N      0.997**       10.476 +- 0.482
  1415 K      1.000**       10.498 +- 0.145
  1416 G      1.000**       10.497 +- 0.181
  1417 E      0.966*        10.174 +- 1.739
  1418 Y      0.984*        10.350 +- 1.190
  1420 F      1.000**       10.498 +- 0.120
  1421 I      0.999**       10.487 +- 0.351
  1422 R      0.995**       10.449 +- 0.695
  1423 N      0.998**       10.477 +- 0.465
  1424 S      0.998**       10.484 +- 0.394
  1425 V      0.996**       10.460 +- 0.619
  1426 P      0.954*        10.063 +- 1.999
  1427 G      0.991**       10.416 +- 0.893
  1428 L      0.958*        10.101 +- 1.915
  1429 S      0.987*        10.373 +- 1.097
  1430 S      0.922         9.717 +- 2.697
  1431 V      1.000**       10.496 +- 0.201
  1432 C      0.986*        10.363 +- 1.138
  1433 I      0.999**       10.495 +- 0.217
  1434 P      0.999**       10.490 +- 0.310
  1435 Y      0.984*        10.351 +- 1.186
  1436 H      0.985*        10.360 +- 1.151
  1437 D      0.950*        10.022 +- 2.087



The grid (see ternary graph for p0-p1)

w0:   0.050  0.150  0.250  0.350  0.450  0.550  0.650  0.750  0.850  0.950
w2:   1.500  2.500  3.500  4.500  5.500  6.500  7.500  8.500  9.500 10.500


Posterior on the grid

w0:   1.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000
w2:   0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  1.000

Posterior for p0-p1 (see the ternary graph)

 0.000
 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000 0.000 0.000

sum of density on p0-p1 =   1.000000
