LINE name	location (in hg17)	target-site alteration	5' junction	sequence of extra 5' nucleotides	3' junction	sequence of extra 3' nucleotides	LINE structure	LINE length	host transposon	divergence (%)
L1PA2	chr1:239380947-239381861	10 bp TSD	5 bp MH		6 bp MH		5' truncated	437	LTR2 (-)	3.9
L1PA4	chr7:56242742-56243528	10 bp TSD	1 bp MH		5 bp MH		5' truncated	487	AluSg	9.5
L1PA3	chr8:49303509-49304763	11 bp TSD	2 bp MH		4 bp MH		5' truncated	166	HUERS-P3b	9.4
L1HS	chr12:106741211-106741532	12 bp TSD	2 bp MH		7 bp MH		5' truncated	91	AluSq	9.2
L1PA4	chr1:200312389-200313333	13 bp TSD	1 bp MH		5 bp MH		5' truncated	517	MLT2A1	4.8
L1PA4	chr4:150317956-150325006	14 bp TSD	4 bp MH		5 bp MH		5' truncated	1458	HERVL-A1	7.1
L1PA4	chr6:147001029-147001660	14 bp TSD	1 bp MH		5 bp MH		5' truncated	435	MER75B (-)	7.5
L1PA4	chr2:69588268-69588984	14 bp TSD	1 bp MH		2 bp MH		5' truncated	145	MER41A (-)	7.5
L1PA5	chr3:185730359-185730766	14 bp TSD	2 bp MH		1 bp MH		5' truncated	105	AluSx	10.3
L1PA2	chr9:9631511-9632657	15 bp TSD	5 bp MH		7 bp MH		5' truncated	489	PABL_A	8.6
L1PA3	chr1:5818447-5820368	15 bp TSD	9 bp MH		6 bp MH		5' truncated	1553	MER4B	9.9
L1PA3	chr10:60293096-60296644	15 bp TSD	5 bp MH		4 bp MH		5' truncated	478	HERVH	9.2
L1PA4	chr7:102211429-102212719	15 bp TSD	2 bp MH		4 bp MH		5' truncated	471	HERVH48	9.2
L1PA4	chr11:46467028-46467569	16 bp TSD	2 bp MH		6 bp MH		5' truncated	232	AluY	8
L1PA4	chr4:166019135-166020968	16 bp TSD	1 bp MH		4 bp MH		5' truncated	786	MER11A	7.2
L1PA4	chr6:103425633-103431601	16 bp TSD	5 bp MH		3 bp MH		5' truncated	372	HERVL-A1 (-)	8.8
L1PA2	chr16:58786441-58789802	16 bp TSD	2 bp MH		3 bp MH		5' truncated	2881	LTR2	5.8
L1PA2	chrX:72662292-72668567	17 bp TSD	3 bp MH		9 bp MH		5' truncated	165	HERVK22 (-)	7.7
L1PA3	chr15:69986146-69987855	17 bp TSD	2 bp MH		9 bp MH		5' truncated	1379	AluY	6.8
L1PA4	chr6:159757199-159762784	17 bp TSD	1 bp MH		5 bp MH		5' truncated	880	HERVL-A2 (-)	7.6
L1PA4	chr18:4743611-4744986	18 bp TSD	4 bp MH		8 bp MH		5' truncated	1151	MER30 (-)	9.6
L1HS	chr21:17591567-17600655	18 bp TSD	1 bp MH		8 bp MH		5' truncated	752	HERV9 (-)	8.4
L1PA5	chr8:145219968-145220844	18 bp TSD	4 bp MH		3 bp MH		5' truncated	255	LTR10E (-)	9.9
L1PA3	chr2:193605889-193606914	8 bp TSD	9 bp MH		4 bp MH		5' truncated	797	LTR7B	4.3
L1PA3	chr7:39794631-39796259	11 bp TSD	12 bp MH		10 bp extra nucleotides	TACACAATAG	5' truncated	1293	AluY	7.2
L1PA4	chr6:123974952-123975377	20 bp TSD	4 bp MH		20 bp extra nucleotides	GGAAATAAGAACAGCAATCC	5' truncated	162	AluSq	7.2
L1PA4	chr8:52456735-52457249	5 bp TSD	1 bp MH		100 bp extra nucleotides	TTCACTATTGTTATGAAAGTTAAAGTCAGCAGTAGCCATAATTTAGCAGTTAACCTGTCATTAGTGTTTCTATTTTTCTTATTAAATCATATCTTTTGGGC	5' truncated	81	AluY	8.9
L1PA4	chr7:139652643-139653117	10 bp TSD	direct		5 bp MH		5' truncated	161	AluSq	9.9
L1PA4	chr1:94837004-94837876	11 bp TSD	direct		3 bp MH		5' truncated	352	LTR7B	8.8
L1PA4	chr11:124280832-124288135	13 bp TSD	direct		2 bp MH		5' truncated	1680	HERVL-A2	8
L1PA2	chr21:39565948-39566339	13 bp TSD	direct		2 bp MH		5' truncated	78	AluY	7.4
L1PA4	chr5:110781661-110784802	15 bp TSD	direct		4 bp MH		5' truncated	2064	MER11C	6.3
L1PA3	chr13:64823440-64824732	16 bp TSD	direct		5 bp MH		5' truncated	714	MER41A	9
L1PA3	chr12:122566835-122568163	16 bp TSD	direct		1 bp MH		5' truncated	571	LTR17 (-)	8.6
L1PA3	chr5:152564607-152565046	18 bp TSD	direct		4 bp MH		5' truncated	242	MER30 (-)	9.5
L1PA3	chr18:1523683-1525621	3 bp TSD	direct		4 bp MH		5' truncated	1630	AluY	6.7
L1HS	chr2:239638464-239638962	8 bp TSD	direct		6 bp MH		5' truncated	151	LTR17	4.3
L1PA5	chr8:21731438-21731924	8 bp TSD	direct		6 bp MH		5' truncated	157	AluY	9
L1PA6	chr2:31770470-31770878	13 bp TSD	direct		direct		5' truncated	53	LTR17	6.5
L1PA3	chr14:41330935-41332228	14 bp TSD	13 bp extra nucleotides	GTTTTTTGTTTGT	4 bp MH		5' truncated	251	MER11A (-)	6.6
L1PA4	chr15:41472702-41473391	15 bp TSD	15 bp extra nucleotides	CATTTTGTTAATCGT	2 bp MH		5' truncated	380	AluSc	8.8
L1PA4	chr12:33220149-33221100	3 bp TSD	21 bp extra nucleotides	GTGGGCAGATCACGAGGTCAA	2 bp MH		5' truncated	640	AluSc	10.5
L1PA2	chr13:81971017-81972385	blunt	2 bp MH		5 bp MH		5' truncated	1068	AluSq	7.7
L1PA3	chr1:155730917-155734524	7 bp TST	1 bp MH		3 bp MH		5' truncated	443	HERVK22	9.9
L1PA3	chr4:94232742-94234345	8 bp TST	2 bp MH		6 bp MH		5' truncated	1289	AluY	9
L1PA4	chrX:18458196-18459052	9 bp TST	2 bp MH		3 bp MH		5' truncated	541	AluSc	9.5
L1PA2	chr1:147716852-147717295	14 bp TST	18 bp extra nucleotides	ACAGAAACCACACTACT	7 bp extra nucleotides	CCACACT	5' truncated	122	AluY	8.8
L1PA4	chr7:109024671-109036505	10 bp TSD	5 bp extra nucleotides	ATGTG	3 bp MH		Full-length	6158	HERVL-A2 (-)	8.6
L1PA2	chr9:32700036-32706635	17 bp TSD	1 bp MH		5 bp MH		Full-length	6010	MER41A	8.5
L1HS	chr6:51847403-51853740	19 bp TSD	3 bp MH		5 bp MH		Full-length	6020	AluY	6
L1PA4	chr5:60207282-60213724	16 bp TSD	direct		13 bp MH		Full-length	6115	AluY	8
L1PA2	chr3:159834618-159841587	20 bp TSD	direct		8 bp MH		Full-length	6018	Charlie3 (-)	9.5
L1PA2	chr8:138639794-138646120	12 bp TSD	direct		5 bp extra nucleotides	GAGAGAG	Full-length	6029	AluSc	7.5
L1PA3	chr7:127525339-127532499	11 bp TSD	4 bp extra nucleotides	GGGG	2 bp MH		Full-length	6130	MER11A	6.6
L1PA4	chr4:100770115-100776801	12 bp TSD	4 bp extra nucleotides	TGAG	2 bp MH		Full-length	6148	MER9 (-)	9.8
L1PA4	chr5:42967052-42974128	12 bp TSD	2 bp extra nucleotides	GA	1 bp MH		Full-length	6187	MER11D	6.3
L1PA3	chr4:54110472-54117877	14 bp TSD	5 bp extra nucleotides	AGGAT	3 bp MH		Full-length	6128	HSMAR1	9.8
L1PA4	chr20:24848364-24861215	15 bp TSD	2 bp extra nucleotides	TG	3 bp MH		Full-length	6187	HERVE	7
L1PA3	chr8:31828581-31835075	15 bp TSD	8 bp extra nucleotides	GCTCTTGA	3 bp MH		Full-length	6023	HSMAR1 (-)	10.3
L1PA4	chr2:215909105-215916677	15 bp TSD	5 bp extra nucleotides	TGGAA	2 bp MH		Full-length	6089	LTR12C	9.9
L1PA3	chr9:32138419-32145208	16 bp TSD	15 bp extra nucleotides	AAAAAGTCCTCAGTG	1 bp MH		Full-length	6041	LTR13	5.2
L1PA2	chr6:109672903-109679282	8 bp TSD	2 bp extra nucleotides	AG	8 bp MH		Full-length	6034	AluY	7.9
L1PA4	chr15:47912383-47923973	9 bp TSD	4 bp extra nucleotides	CGGG	2 bp MH		Full-length	6149	HERVK22 (-)	9.8
L1PA5	chr14:65720035-65726399	10 bp TSD	3 bp extra nucleotides	CTG	8 bp extra nucleotides	CCACACAC	Full-length	6132	AluY	7.6
L1PA2	chr18:23571487-23577889	10 bp TST	16 bp extra nucleotides	AAAAGTTGCAGTTTCC	1 bp extra nucleotides	G	Full-length	6036	THE1D	9.5