LINE name	location (in danRer2)	target-site alteration	5' junction	sequence of extra 5' nucleotides	3' junction	sequence of extra 3' nucleotides	LINE structure	LINE length (bp)	host transposon	divergence (%)
CR1-3_DR (ZfL2-3)	chr10:33634104-33635706	12 bp TSD	1 bp MH		7 bp MH		5' truncated	1131	HATN13_DR (-)	9.1
CR1-3_DR (ZfL2-3)	chr19:25948116-25948994	7 bp TSD	4 bp MH		5 bp MH		5' truncated	137	TC1DR3 (-)	11.5
CR1-3_DR (ZfL2-3)	chr9:29573885-29574895	4 bp TSD	3 bp MH		4 bp MH		5' truncated	287	HARBINGERN5_DR (-)	11.5
CR1-3_DR (ZfL2-3)	chr10:4961568-4962923	5 bp TSD	2 bp MH		3 bp MH		5' truncated	779	HARBINGERN4_DR	11.5
CR1-3_DR (ZfL2-3)	chr17:2822810-2825269	3 bp TSD	2 bp MH		3 bp MH		5' truncated	1825	LOOPERN3_DR (-)	6.3
CR1-3_DR (ZfL2-3)	chr19:22291066-22292240	2 bp TSD	2 bp MH		3 bp MH		5' truncated	131	HARBINGERN3_DR (-)	8.7
CR1-3_DR (ZfL2-3)	chr7:50154687-50155515	8 bp TSD	1 bp MH		3 bp MH		5' truncated	280	TDR18 (-)	8
CR1-3_DR (ZfL2-3)	chr7:3087612-3088678	6 bp TSD	1 bp MH		3 bp MH		5' truncated	823	HATN3_DR (-)	10.9
CR1-3_DR (ZfL2-3)	chr21:22218821-22219490	3 bp TSD	1 bp MH		3 bp MH		5' truncated	181	TDR18 (-)	7.2
CR1-3_DR (ZfL2-3)	chr6:2460589-2462681	5 bp TSD	3 bp MH		2 bp MH		5' truncated	1630	HATN10_DR	11.3
CR1-3_DR (ZfL2-3)	chr11:31027698-31028601	5 bp TSD	2 bp MH		2 bp MH		5' truncated	631	TDR14 (-)	11.9
CR1-3_DR (ZfL2-3)	chr7:350426-352790	4 bp TSD	2 bp MH		2 bp MH		5' truncated	2040	HARBINGERN6_DR	9.4
CR1-3_DR (ZfL2-3)	chr5:15330040-15330760	4 bp TSD	2 bp MH		2 bp MH		5' truncated	288	DNA15TA1_DR (-)	7.6
CR1-3_DR (ZfL2-3)	chr13:12399798-12401103	1 bp TSD	2 bp MH		2 bp MH		5' truncated	209	TDR8 (-)	11.2
CR1-3_DR (ZfL2-3)	chr20:4908356-4909288	7 bp TSD	1 bp MH		2 bp MH		5' truncated	584	TC1DR2 (-)	10.3
CR1-3_DR (ZfL2-3)	chr19:20709065-20710513	6 bp TSD	1 bp MH		2 bp MH		5' truncated	231	LOOPERN5_DR	11.7
CR1-3_DR (ZfL2-3)	chr8:10371560-10372145	6 bp TSD	1 bp MH		2 bp MH		5' truncated	185	DNA9NNN1_DR (-)	8
CR1-3_DR (ZfL2-3)	chr16:25133920-25135066	5 bp TSD	8 bp MH		1 bp MH		5' truncated	43	TC1DR3	8
CR1-3_DR (ZfL2-3)	chr21:22997157-22997617	3 bp TSD	5 bp MH		1 bp MH		5' truncated	134	TDR18	8.7
CR1-3_DR (ZfL2-3)	chr15:30264861-30266106	8 bp TSD	3 bp MH		1 bp MH		5' truncated	833	HATN1_DR	9.6
CR1-3_DR (ZfL2-3)	chr13:14231889-14234472	7 bp TSD	1 bp MH		1 bp MH		5' truncated	1683	TC1DR3	10.9
CR1-3_DR (ZfL2-3)	chr12:34088964-34090159	6 bp TSD	1 bp MH		1 bp MH		5' truncated	773	HATN13_DR (-)	10.6
CR1-3_DR (ZfL2-3)	chr12:702999-703724	5 bp TSD	1 bp MH		1 bp MH		5' truncated	190	TDR18	8.4
CR1-3_DR (ZfL2-3)	chr1:7873988-7875294	4 bp TSD	1 bp MH		1 bp MH		5' truncated	161	TC1DR3 (-)	9.9
CR1-3_DR (ZfL2-3)	chr10:4117877-4118384	3 bp TSD	1 bp MH		1 bp MH		5' truncated	126	Tc1N1_DR (-)	9.9
CR1-3_DR (ZfL2-3)	chr9:21178290-21180034	2 bp TSD	4 bp MH		7 bp extra nucleotides	AAAATGC	5' truncated	1428	HATN1_DR (-)	12
CR1-3_DR (ZfL2-3)	chr24:2257938-2258886	1 bp TSD	4 bp MH		91 bp extra nucleotides	ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA	5' truncated	659	TDR18 (-)	12
CR1-3_DR (ZfL2-3)	chr16:36982869-36983687	6 bp TSD	direct		4 bp MH		5' truncated	356	SINE_DR2 (-)	9.6
CR1-3_DR (ZfL2-3)	chr2:11582881-11583728	8 bp TSD	direct		2 bp MH		5' truncated	241	TDR2	7.5
CR1-3_DR (ZfL2-3)	chr11:9266063-9267512	5 bp TSD	direct		1 bp MH		5' truncated	1109	HE1_DR1	11.8
CR1-3_DR (ZfL2-3)	chr11:3328385-3330048	9 bp TSD	35 bp extra nucleotides	AAATCTCCAATTCTTGCTCCAATCCTCCTTGCTCT	6 bp MH		5' truncated	1081	TDR18	7.3
CR1-3_DR (ZfL2-3)	chr5:28383521-28383937	8 bp TSD	42 bp extra nucleotides	GTCATTTTTATTATTTTGTTTTTATTTTACTTGTTTCTTTTC	6 bp MH		5' truncated	111	TC1DR3 (-)	7.1
CR1-3_DR (ZfL2-3)	chr14:7123521-7124633	6 bp TSD	1 bp extra nucleotides	A	4 bp MH		5' truncated	169	TDR2 (-)	6.3
CR1-3_DR (ZfL2-3)	chr5:61444090-61444919	5 bp TSD	2 bp extra nucleotides	CT	3 bp MH		5' truncated	359	HATN10_DR (-)	7.8
CR1-3_DR (ZfL2-3)	chr6:3631072-3632172	5 bp TSD	4 bp extra nucleotides	TACT	3 bp MH		5' truncated	259	HARBINGERN4_DR	6.3
CR1-3_DR (ZfL2-3)	chr14:35524731-35526412	5 bp TSD	9 bp extra nucleotides	TACTGGGTG	3 bp MH		5' truncated	509	HATN2_DR (-)	11.4
CR1-3_DR (ZfL2-3)	chr10:2029664-2029936	6 bp TSD	23 bp extra nucleotides	TTTTTTCATACTTGTCTTTTTTT	3 bp MH		5' truncated	32	PROTOP1_DR (-)	7.8
CR1-3_DR (ZfL2-3)	chr20:38042608-38043036	5 bp TSD	39 bp extra nucleotides	CCTGTTTTTATGACAATATGATAACCTGTTTTAAACACA	3 bp MH		5' truncated	157	HATN14_DR	9.9
CR1-3_DR (ZfL2-3)	chr19:22276745-22277778	3 bp TSD	1 bp extra nucleotides	T	2 bp MH		5' truncated	304	DNA9NNN1_DR	10.8
CR1-3_DR (ZfL2-3)	chr21:27395122-27396550	7 bp TSD	5 bp extra nucleotides	TGGTG	2 bp MH		5' truncated	822	CR1-1_DR	9.1
CR1-3_DR (ZfL2-3)	chr10:24262405-24263349	7 bp TSD	10 bp extra nucleotides	TATTTTAGCT	2 bp MH		5' truncated	564	HE1_DR1	11.9
CR1-3_DR (ZfL2-3)	chr21:8869626-8869938	4 bp TSD	10 bp extra nucleotides	TTATATCACA	2 bp MH		5' truncated	125	HE1_DR1 (-)	11.1
CR1-3_DR (ZfL2-3)	chr8:21477225-21477458	6 bp TSD	15 bp extra nucleotides	TCCTAAACTTGTTTT	2 bp MH		5' truncated	88	PROTOP1_DR	2.9
CR1-3_DR (ZfL2-3)	chr11:1099658-1100232	6 bp TSD	16 bp extra nucleotides	GTTTTTATTGTGTTTT	2 bp MH		5' truncated	207	HE1_DR1	10.8
CR1-3_DR (ZfL2-3)	chr5:53952341-53954349	5 bp TSD	17 bp extra nucleotides	AACGTGACTTTTAAACG	2 bp MH		5' truncated	1703	HARBINGERN1_DR (-)	11
CR1-3_DR (ZfL2-3)	chr16:36751576-36752205	5 bp TSD	89 bp extra nucleotides	CCGGGTGATCACTAGGATGGGAAAGTCCCAGAGTAAAGGGGGAAAATATGATATACAGGTGTTTTGGAATATGTAAATATCTTTACGC	2 bp MH		5' truncated	137	DNA15TA1_DR (-)	8.9
CR1-3_DR (ZfL2-3)	chr17:16654055-16659554	3 bp TSD	5 bp extra nucleotides	TTGCA	1 bp MH		Full-length	5007	LOOPERN2_DR	2.7
CR1-3_DR (ZfL2-3)	chr11:28760373-28761229	2 bp TSD	13 bp extra nucleotides	TTTTTTTTTCTTC	1 bp MH		5' truncated	216	TDR23 (-)	10.7
CR1-3_DR (ZfL2-3)	chr21:22997701-22998359	3 bp TSD	14 bp extra nucleotides	TTATTTGTTTTGTT	1 bp MH		5' truncated	129	TDR18	8.2
CR1-3_DR (ZfL2-3)	chr7:18167371-18167681	4 bp TSD	44 bp extra nucleotides	TTAAAAAAAAAATATATATATATATATATATTATTTGTTTTTAT	1 bp MH		5' truncated	103	TDR20 (-)	6.4
CR1-3_DR (ZfL2-3)	chr19:49759328-49760214	1 bp TSD	5 bp extra nucleotides	AAAAT	direct		5' truncated	60	DNA9NNN1_DR	8.5
CR1-3_DR (ZfL2-3)	chr16:16996693-16998751	9 bp TSD	99 bp extra nucleotides	AGAGGGGTCTGGAAGCAGACCTGGTGTAGTGCAATCTGTGCTGCATCCAATGCTTTTTAATAGGCTCACCTAACCCCACCCCTAACCCTCTCTGTTCCC	61 bp extra nucleotides	ACCCCTCGCTGAGTGATGCAATCTCAGCTTGCATCATAAAGGCTGCACCTGGTTTCTATTG	5' truncated	1374	SINE3-1	9.4
CR1-3_DR (ZfL2-3)	chr20:50872708-50874352	blunt	17 bp extra nucleotides	AAAATTTGAGTTAATTA	2 bp MH		5' truncated	761	TDR1	7.9
CR1-3_DR (ZfL2-3)	chr25:21405594-21406998	2 bp TST	3 bp MH		2 bp MH		5' truncated	866	TDR18 (-)	7.3
CR1-3_DR (ZfL2-3)	chr14:27244882-27245240	2 bp TST	6 bp MH		direct		5' truncated	228	TZF28 (-)	10.8
CR1-3_DR (ZfL2-3)	chr5:2252136-2252833	2 bp TST	5 bp MH		3 bp extra nucleotides	AAA	5' truncated	187	TDR18	4.4
CR1-3_DR (ZfL2-3)	chr21:12198304-12198799	73 bp TST	2 bp MH		6 bp extra nucleotides	ATAAGT	5' truncated	270	TDR16	11
CR1-3_DR (ZfL2-3)	chr17:5593187-5594744	6 bp TST	2 bp MH		8 bp extra nucleotides	AATTATTT	5' truncated	721	HATN16_DR (-)	7.2
CR1-3_DR (ZfL2-3)	chr21:24898062-24899076	33 bp TST	2 bp MH		16 bp extra nucleotides	AAAATGTTTTCTTTTT	5' truncated	684	TDR18	6
CR1-3_DR (ZfL2-3)	chr9:41346760-41349061	3 bp TST	direct		1 bp extra nucleotides	A	5' truncated	1128	TDR22 (-)	12
CR1-3_DR (ZfL2-3)	chr17:16138697-16139733	43 bp TST	direct		25 bp extra nucleotides	ATAGATATGGGCTAGTAGGGAATTT	5' truncated	610	HATN7_DR (-)	8
CR1-3_DR (ZfL2-3)	chr8:21559057-21559550	63 bp TST	31 bp extra nucleotides	CTCTTCTCCCACAGTCCAAAGACATGCGGTA	3 bp MH		5' truncated	93	HE1_DR1	11.3
CR1-3_DR (ZfL2-3)	chr20:31728191-31728842	58 bp TST	72 bp extra nucleotides	CACTGTCTTTTTTTTTTTTTTTTTTACATATATACATATATATATATATATATTTCCTTTTCTTATATTTGAATACAAGTTTTATTTTATGTTTTCAAATATTTTATTTTAT	2 bp MH		5' truncated	103	TDR7	7.7
CR1-3_DR (ZfL2-3)	chr8:27209734-27210969	278 bp TST	1 bp extra nucleotides	G	1 bp MH		5' truncated	637	TZF28 (-)	11.3
CR1-3_DR (ZfL2-3)	chr1:42154170-42154713	21 bp TST	8 bp extra nucleotides	GTTGTGTA	1 bp MH		5' truncated	310	HE1_DR1	10.1
CR1-3_DR (ZfL2-3)	chr17:7815700-7817455	14 bp TST	13 bp extra nucleotides	CTCTGTTAAAACA	1 bp MH		5' truncated	1587	Tc1N1_DR	10.2
CR1-3_DR (ZfL2-3)	chr7:3820928-3822366	6 bp TST	3 bp extra nucleotides	GTG	direct		5' truncated	837	HATN2_DR (-)	8.6
CR1-3_DR (ZfL2-3)	chr13:30333504-30334567	13 bp TST	6 bp extra nucleotides	TTTTAA	direct		5' truncated	779	TDR18 (-)	10.5
CR1-3_DR (ZfL2-3)	chr10:5335413-5335894	42 bp TST	114 bp extra nucleotides	CAAGACAGTTGTTAGACTGTTAGACAGTTTAGTTAGACAGGTTAGACAGTTGTTCAAAATAATATAAATGTTTAATAAACAATAAATAGACATATTTAAATTTTTTTTCTTCGT	direct		5' truncated	119	Tc1N1_DR (-)	10.8
CR1-3_DR (ZfL2-3)	chr20:22799281-22800516	80 bp TST	22 bp extra nucleotides	ATTATGATACAAAATCCTTGTT	15 bp extra nucleotides	AATAAACTGCAGTAC	5' truncated	847	Tc1N1_DR	10.8
CR1-3_DR (ZfL2-3)	chr18:12757091-12757408	22 bp TST	33 bp extra nucleotides	CTCTTCTCTTTCATTCTTCACTCTTTCAACACA	15 bp extra nucleotides	ACATTTGTAAAAACA	5' truncated	149	DNA11TA1_DR	11.3
CR1-3_DR (ZfL2-3)	chr2:48192145-48193253	131 bp TST	44 bp extra nucleotides	GAACTTCTACTACATGTTCATGCTTTTTCTACATGTTCATGCTT	19 bp extra nucleotides	ACATCAAAAGCTACTGGCC	5' truncated	706	HATN10_DR	10.9
CR1-3_DR (ZfL2-3)	chr1:1485049-1485452	3 bp TST	35 bp extra nucleotides	GTGTAAATAGATGATTTTAGTGTAAATAGATTTAG	20 bp extra nucleotides	TTTTCCTTTATCATAAAAAT	5' truncated	71	HATN5_DR (-)	10.8
CR1-3_DR (ZfL2-3)	chr1:53378359-53379974	7 bp TST	4 bp extra nucleotides	GGCC	21 bp extra nucleotides	ATAAAAAAAATAAATAAATTA	5' truncated	763	TC1DR2	9.8