Comparison of: (A) HS_intron gene NOTCH4, 18th intron: HS_38__18 - 6362 nt (B) MM_intron gene notch4, 18th intron: MM_29__18 - 2763 nt using matrix file: DNA, gap open/ext: -12/-4 E(limit) 1e-06 57.9% identity in 273 nt overlap (48-320:23-249); score: 258 E: 9.3e-16 50 60 70 80 90 100 110 120 130 HS_38_ GATGGGAGAGACAGTAGTGACTGAGGGAAGACCCAATGTATCCATTTCACCTCCTTTTATTTTTTTTAACCCCACACACCCAACTAACCA :::::: : ::: : : :: ::::: : : : :::::: ::: : :::::: : ::: :::::::: : ::: MM_29_ GATGGGGG---CAGGGGGGGGGTAGTGAAGATCTAGTTTATCCAGTTCTCTTCCTTT-----------AAGCCAGGCACCCAACCACCCA 30 40 50 60 70 80 90 140 150 160 170 180 190 200 210 220 HS_38_ CAAAGTCATGCCACTTTATCTCCTGAAGTTTTCTCAAGTCTGTGCTTTCACCTTCACCCTTTGTCCCACTGCCTGAGTCCTGACCTTTGT : :::: :::: : ::: : : ::: : : ::::: :::::: ::: : ::: : : :: ::::: MM_29_ CTGGGTCAGGCCATGCCACCTCATAAGAACTTCCCTATGCTGTGTTTTCAC-TTCTTCTTTTCTTTC-----------CCCCACCTT--- 100 110 120 130 140 150 160 170 230 240 250 260 270 280 290 300 310 HS_38_ TGCGTTCCAGATAGATACTTGCATCAGCCTCCTAACTACAGTCTCTGCCTCCACACTTGTCCTTCTATAGGTTCAGCCTTTACCCCGTGG ::::: ::::: :::: : :: ::::::::::: : ::: :::::: :: :::: ::::::::: : MM_29_ -------------GATACCAACATCAAACTCC----TGCAACCTCTGCCTCCATATTTGCCCTTCTGATGGCTCAGTCTTTACCCCATTA 180 190 200 210 220 230 240 320 HS_38_ CCA ::: MM_29_ CCA ---------- 59.8% identity in 271 nt overlap (5382-5639:1110-1372); score: 254 E: 2e-15 5390 5400 5410 5420 5430 5440 5450 5460 5470 HS_38_ TCACCATATTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCCACCTCAGCCTACCAAAGTGCTGGGATTACAGGCGTGAGCC :::: : : : ::::::::: :: :::::: : :::::::: : :: : :: :: : : :::::::::: :::: :: MM_29_ TCACTCTGTGGACCAGGCTGGCCTTGAACTCA-------GAGATCTGCCTGCTTCTGTCTCCCCAGGGGCTGGGATTAAAGGCACATGCT 1110 1120 1130 1140 1150 1160 1170 1180 1190 5480 5490 5500 5510 5520 5530 5540 5550 HS_38_ ACCGC-ACCCGGCTATTTACT-TCTTCTTTTATGAAGCTCCCTC-CTCCAAAAC---ACCCCCATC-ACCTGTT---CCTTCCAGCTCTC : : : :::: ::: : : : ::::: :: : :: :: :::::: : ::::: : : ::: :: :::::: : :: MM_29_ ATCACCACCCAGCTTGCTTTTATGTTCTTAACTGCTGAGCCATCTCTCCAACTCCCTACCCCTACCCACCCTTTTCTCCTTCCTTCCTTC 1200 1210 1220 1230 1240 1250 1260 1270 1280 5560 5570 5580 5590 5600 5610 5620 5630 HS_38_ TGACCACTCCTTGGATTCTCTGTGAATTCCCTT-TTCTCTCTTTGAAGCCTGCCTTCCTGG--TACTGTACTCTTGCACACTCTCTTTCC :: ::::: : :: : :::: : ::: ::: :: ::: :::::: : :: :: : : : : ::: :::: MM_29_ CTTCCT-TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCCTTTCTTCCTTTCTTCCTTCCCTCCTTCCTTCCTTCCCTCCCTCCTTCC 1290 1300 1310 1320 1330 1340 1350 1360 1370 HS_38_ T : MM_29_ T ---------- 55.9% identity in 347 nt overlap (5674-6015:1856-2186); score: 238 E: 4.3e-14 5680 5690 5700 5710 5720 5730 5740 5750 5760 HS_38_ CAATGACCCTTCTCTCACTAGCTGAGTGGCATGAAGAAGCAGAAAATGGTTAAGAGCATTGGTTTGGAGTCACAGACCTTCATTGATTCC ::: : : : ::: :: :::: :::: :::::: : : ::: :: : :: : : : :: : : : :: :: : MM_29_ CAAAGCCTCCCTTCTGGCTTGCTGTCCGGCA----GAAGCATAGTAC--TTATGACTTTGGGCTAGCAAGCAAAAATCA-CAGTGTGGCT 1860 1870 1880 1890 1900 1910 1920 1930 5770 5780 5790 5800 5810 5820 5830 5840 5850 HS_38_ CAGCTCTGCCACCTATAGCTATTTGACTTGCACAAGTCACTA-ACCTTTCAGAGACTCAGCTTCCTTACGTGCAAAGTAAAAATCGAATG : : : : :: : : :::::: :: : :::::: ::::: : : : ::: ::: :: : : : :: : :: MM_29_ CTGGACCGAG-CCAGTCTTTCTTTGAC--CCAGATGTCACTTCACCTTCTTGGCAAACCATTTCGTTATCTGTGGAATGGAGATGAAGTG 1940 1950 1960 1970 1980 1990 2000 2010 2020 5860 5870 5880 5890 5900 5910 5920 5930 5940 HS_38_ AGATAACCCAAATAAAATGTCATTAGGGGGAT--TTTTAGGTTATGTATATAAATCATGCAATAAATGCTAGTCATTTCTTTCCTCTGGT ::::: : : :: :: : :::: ::: ::: :::: : : : :: : :::: ::::: : : : ::: :::::::: MM_29_ AGATAGTATCTCTTCAGGGTTGCTAAGAGGATGGTTTAAGGCTATGCACACAGATTACACAATCAATGCCAACCCTCTCTCCCCTCTGGT 2030 2040 2050 2060 2070 2080 2090 2100 2110 5950 5960 5970 5980 5990 6000 6010 HS_38_ TG-ACTGAGAGCTTCCAGGAAATAGGAATGGGTTCTAACTTTC-TTTGTATTCCTAGTGCCTAAAACGGTGCCTGAC : : :: :::::: ::: :::: :::: ::: ::: :: :: : : ::::: : :::: : MM_29_ TATAGACAGTGCTTCC------TAGAAATGCAGACTAATTTTAATTTTTACCTGTACTACTTAAAATGCCACCTGGC 2120 2130 2140 2150 2160 2170 2180 ---------- 59.3% identity in 285 nt overlap (6017-6297:2479-2730); score: 225 E: 5.3e-13 6020 6030 6040 6050 6060 6070 6080 6090 6100 HS_38_ CAAAGTAGGCACTCAATAGATGCTTATGAATTAATAAAGTATGAGAGAGCCTGGTAGGTAT-TTAGCAGGGGAGGAAGGTTTTACCAAAA : :::: : : ::: ::: : ::::: : ::: : :::::: :: :::: :::: :: : : : : : :: : :: :: MM_29_ CCAAGTCGATAATCATCAGACACCTATGATTCAAT---GCATGAGAAAGGCTGGAGGGTAAGTTGGTACGAAAAAGAAGTGTCCCCCCAA 2480 2490 2500 2510 2520 2530 2540 2550 2560 6110 6120 6130 6140 6150 6160 6170 6180 6190 HS_38_ ATGGTGCTGTGTTTGGTGGCAGTGTGTCATAGAGATTGTTTGGGACTGGGGAAGTTTGAGTTGTGTGTCGCC-AACAATTGTGTCTCATG ::: :: :: :: ::::: : ::::::::::::: ::: :::: : :::: : ::::: :: : ::: MM_29_ ATGAGGCAATGCTTAGTGGCC-----------ACATTGTTTGGGACTAAGGAT-TTTGC----TCTGTCACTGAACAACTGCATGTCA-- 2570 2580 2590 2600 2610 2620 2630 6200 6210 6220 6230 6240 6250 6260 6270 6280 HS_38_ GGGAGTTGAGATAGAAGGATTGTGACACATGGCCATGATGGATGGTGAGTTGAGTGATGCTGTT--GAGCTGGAAGGTGGGGGACTGGAC :: ::: : ::: : :: :: :::: ::: :: : :: :: :: : : ::: :: ::::::: : :::: : MM_29_ GGTAGTACTCAGAGAGGC----TG-CA-ATGG-----ATGAGTGAGAACTTCAGCTGTGGAGGTAGGAGGCGGGAGGTGGGAGGCTGG-C 2640 2650 2660 2670 2680 2690 2700 2710 6290 HS_38_ AGACTATCTTGAGCT :::: : :::::::: MM_29_ AGACCACCTTGAGCT 2720 2730 ---------- 68.0% identity in 103 nt overlap (661-762:299-400); score: 194 E: 2e-10 670 680 690 700 710 720 730 740 HS_38_ GCCTCTTCTTTG-TGGTCCAGGTCACTAAGCCAGGAGAGGCAAAGCTGGCATTCAAGTCTAAGCAGCCTGATTCATATGCTCAGAACCAC : :::: : : : ::::::::::: : : :::::::::: :: : ::: ::: :: :: : : : : :: : :::::: :: : : MM_29_ GTCTCTCCCTCGCTGGTCCAGGTCGCCAT-CCAGGAGAGGAAATGTTGGGATTATAGCAGAATCCGTTTAAATCCTGTGCTCAAAAACTC 300 310 320 330 340 350 360 370 380 750 760 HS_38_ AACTTTTTTGTGT : :::::: : : MM_29_ ACTTTTTTTTTTT 390 400 ----------