Comparison of: (A) HS_intron gene GLA, 1st intron: HS_55__1 - 3720 nt (B) MM_intron gene Ags, 1st intron: MM_69__1 - 4279 nt using matrix file: DNA, gap open/ext: -12/-4 E(limit) 1e-06 58.2% identity in 672 nt overlap (929-1503:1025-1667); score: 579 E: 1.4e-42 930 940 950 960 970 980 990 HS_55_ TCTTCAAATTCTCAAAGGGCTCTGTGATTTAAAAAAGGTTAGGAATCA-----------------------CTGATAGATGTTGGT-AAA :::::: ::::: ::: : :::::::: :: ::::: ::: ::: :: :: ::: : :: : ::: MM_69_ TCTTCAGATTCTTAAAAGAATCTGTGATCTAGAAAAGATTAAGAACCAAGTTTTAGATAGTGCATGGCTCCCTTATAAGTATTATTGAAA 1030 1040 1050 1060 1070 1080 1090 1100 1110 1000 1010 1020 1030 1040 1050 1060 HS_55_ AGGTGGCA--GTCAC--AGT----ACA--------TTTCTGTGTCCATAAGTTATTCCTATGAATATCTTTATAGATAAAGTCAGGATGT : : : : ::::: ::: ::: : ::::::: :: ::::: : :: ::::: :: :: : :::::::: : : : MM_69_ ACATAGTAAGGTCACCCAGTGGTGACACAACTTCCTCTCTGTGTTCACCAGTTACTTCTCTGAATGCCTATAAGGGTAAAGTCAAGGTAT 1120 1130 1140 1150 1160 1170 1180 1190 1200 1070 1080 1090 1100 1110 1120 1130 1140 HS_55_ TGGTCAGACATCACAGAAGAAATTGGCCTTGTAAGTTTCA------------TGTGACCCTGTGGTACAGTATGTG------TGGCAATT ::: ::::::::: : ::::: :::: :: : ::::::: ::: ::::: : :: : : :::: :: :::: MM_69_ TGGACAGACATCATAAGAGAAAATGGCTTTCTGAGTTTCAGACTATGCCCATTGTATCCCTGAGTTAAAATCTGTGGTAACTTGACAATA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1150 1160 1170 1180 1190 HS_55_ TTGCCCATCACGGATTTTTTTTTA-----------TTGGTATTTGCATCTGATTAT-------------------------AAAACTAAT : : : :: :::::::: ::: :: : : ::: :: : :::::::: MM_69_ TAGGGTTTTGGGGGCTTTTTTTTTGTCTTTTTGTTTTGTTAATGGTGGCTGGTTTTTTTTTGGGGGGGGGGAGGCTGTTAGAAAACTAAC 1300 1310 1320 1330 1340 1350 1360 1370 1380 1200 1210 1220 1230 1240 1250 1260 1270 1280 HS_55_ GCATGATCATTGCAAAAAATGTAGA--TAAAGAAGAGCAAAATGAAAATAAAGATTTCCCCCCACCGTTCCACCACCCAGAAATAATCAT :::: ::: :::::: :: ::: :::: : :: : ::: :::: ::: :: :: :: :: :::::::::::::: MM_69_ ACATGGTCACTGCAAACAAGTTAGTGGTAAAAATGAT-ATGATGGAAATTAAGCCTTTTTA------TTTCATCATCCAGAAATAATCAT 1390 1400 1410 1420 1430 1440 1450 1460 1290 1300 1310 1320 1330 1340 1350 1360 1370 HS_55_ GGTTTAAATGTTAATATACAACCTTACAATTGTTTTCTATATAAATGAAAACATAGATTTCTTTATTTCATTATTTTCCATAAAAAATGG ::: ::: : :::::::: : :: :::::: ::: :::::::::::: ::::::: :: :: : : :: ::::: : MM_69_ GGT--GAATATCTATATACAAATCTGCAGTTGTTTATTATGTAAATGAAAACACAGATTTC--TAATTGACT-----CCCCAAAAATAGC 1470 1480 1490 1500 1510 1520 1530 1540 1380 1390 1400 1410 1420 1430 1440 1450 1460 HS_55_ ATCATGTTTATGTCATGTTTGGCTAATGGCAAGACCCTGGCACCCAGTCTGGGCTCAAATTCTGCCTCATTGTTACTT-AGCCCTGTGAC :: : ::::::: :: :: :::::::: : ::: : :: :: ::::::::: : : : ::: ::: :: : : : MM_69_ ATGACTTTTATGTG-----TGAGTACCATCAAGACCCCAGTGCCCTGCCTAGGTTCAAATTCTACGTTAGTGTGGCTTTAGGC--GAAGC 1550 1560 1570 1580 1590 1600 1610 1620 1630 1470 1480 1490 1500 HS_55_ ATTGGGTAAATTACACTTTTTTTTTTTTTTTTTTTTTGAGAC :: : : ::: ::::: ::::: :: ::: : ::: MM_69_ AT----TCATTTA--CTTTTGTTTTTCTTGAAGTTTGGGGAC 1640 1650 1660 ---------- 65.8% identity in 263 nt overlap (378-624:267-523); score: 409 E: 2.2e-28 380 390 400 410 420 430 440 450 HS_55_ GGTTCTATTCAGACCCTTCTTGTGAACTT-----CTGCTCTTCCT-----CT-GCCGGGTGCTAACCGTTAGAACATCTAGGGTGGGTAG ::::: : ::::::::: :::: :: :::::::: : :: ::: : :::: :: : : ::: : : :::: : MM_69_ GGTTCCACGCAGACCCTTTGTGTGGGTTTGTATTCTGCTCTTGTTTAGTGCTAGCCTTGAGCTAGCCATACGTACAGTTGGATTGGGCAA 270 280 290 300 310 320 330 340 350 460 470 480 490 500 510 520 530 540 HS_55_ GAGGAATGGGGAACTAAGATTCGTGCCATTTTTTCTCCTTTTGGGGTCGTGGATTTCTCGGCAGTA-TCTCGAGGGAGTTAGAGAGACCA ::::: :: ::::::: :: ::::::: : ::::: :: :: :: :: : :: ::: : : :::::::::: :::: MM_69_ GAGGA-TG----ACTAAGACCAATGTGATTTTTTTTTCTTTTTGGATCACGGGTTCTTTAGCTGTAATGAAGCTCGAGTTAGAGAAACCA 360 370 380 390 400 410 420 430 440 550 560 570 580 590 600 610 620 HS_55_ TAAGGTCGCTGAGATCTCTCC----CACCTCGCCCATGAGCGTGGCATCAGGCTGGAAGGTTGACATGGAGGAACTTTATACA :: : : :::::: : : ::: : :: : ::: : ::: : ::: :::::::::::: :::: :: : :::::: ::::: MM_69_ TAGGATAGCTGAGGTGT-TCCTGAACCCCCCTCCCTTAAGCATAGCACCAGGCTGGAAGGCTGACCTGAAAGAACTTGATACA 450 460 470 480 490 500 510 520 ---------- 69.4% identity in 186 nt overlap (3536-3720:4100-4279); score: 357 E: 4.7e-24 3540 3550 3560 3570 3580 3590 3600 3610 3620 HS_55_ TAACGGGATAAGAGAGACAAAAGAAAATCTGGAAAAACAATTCATTTT-ACCTTACATTGCTTGTGATTACTACCACACTATTACTGGGT :: :::: :: :::: : :: :: :::: : :::::::: :::: :: : :::::::::::::::: : ::::: : MM_69_ TAGTGGGAGGAGGGAGAGAGGAGTAATG--GGAAGGATGGTTCATTTTTACCT--CAGGGGTTGTGATTACTACCACGGTGCTACTGCAT 4100 4110 4120 4130 4140 4150 4160 4170 4180 3630 3640 3650 3660 3670 3680 3690 3700 3710 HS_55_ TGGAAAAAATTGTGAAATCCCAAGGTGCCTAATAAATGGGAGGTACCTAAGTGTTCATTTAATGAATTGTAATGATTATTGGAATTTCTC : : ::: ::::::::::: :::: ::: : ::::::::: : :::: ::: ::: :::: ::::: : : :::::::: MM_69_ TTTTAGAAACTGTGAAATCCCGAGGTACCTTA-AAATGGGAGCG-CTGAAGTAGTCACCTAACACATTGGAATGACTGTCTGAATTTCTT 4190 4200 4210 4220 4230 4240 4250 4260 4270 3720 HS_55_ TTTCAG :::::: MM_69_ TTTCAG ---------- 67.5% identity in 169 nt overlap (3235-3400:3642-3806); score: 314 E: 1.8e-20 3240 3250 3260 3270 3280 3290 3300 3310 3320 HS_55_ GTATGCTTATCCAAGAGCAAAATAATATTTCTCCATTTATTCAAATCATTTAGGAGCATCATAGTTTTAACATATGGGCCTTGCAC---G :: : :: ::::::::: :: ::::: ::::::::::::::::: :::: :: : :: ::::::::::::::: : : :: : MM_69_ GTTTCCTGATCCAAGAGTAAGATAATGTTTCTCCATTTATTCAAGCCATTGAGAAACAGAATAGTTTTAACATATAGTTGATAAACATAG 3650 3660 3670 3680 3690 3700 3710 3720 3730 3330 3340 3350 3360 3370 3380 3390 3400 HS_55_ TATCTTAAATTTATCTCTAGGCATTTTAGGTTGTTCAGTTGTTCTTGTGAATGGGATCTTTTTCTCCAAATAGGATTAT :: : :: :::: :::: : :: :: : :: :::::: :::: :: : :: : : : ::: :::: : MM_69_ TAATCTCTATGTATC-CTAGCCTTTGCTGGCTCTTTTGTTGTTGTTGT---TGTTAGTATTATGTACGAATGAGATTGT 3740 3750 3760 3770 3780 3790 3800 ---------- 62.9% identity in 259 nt overlap (1-248:5-241); score: 311 E: 3.2e-20 10 20 30 40 50 60 70 80 HS_55_ GTATCAGATATTGGGTACTCCCTTCCCTTTGCTTTTCCATGTGTTTGGGTGTGTTTGGG-GAACTGGAGAGTCTCAACGGGAACAGTTGA : :: :::: : : :: ::: : : :::: : : : : ::: ::::::: ::::: ::: :::: ::: :: :::: MM_69_ GAATGAGATGTGGAGTGATCCTTCCTCTTTCCGTGT--GTTTGTGTGGGTGTCTTTGGTAGAA--GGAG---------TGGAGCATTTGA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 HS_55_ GCCCGAGGGAGAGCTCCCCCACCCGACTCTGCTGCTGCTTTTTTATCCCCAGCAAACTGT--------CCCGA-ATCAGGACTAGCCCTA :: ::::: :: :: : :: : : : ::::::::::: :: ::::: : : ::::: ::: :::: : ::: MM_69_ GCTGGAGGGGTAGATCTCGAAC-------TACAGATGCTTTTTTATTCC-AGCAATTTTTATATTCCACCCGAGATCTAGACTGTCTCTA 90 100 110 120 130 140 150 160 180 190 200 210 220 230 240 HS_55_ AACTTTC-TCTGTGTGACCTTTCCTGGGATGGGAGTCCGGCCAGCGGCCCCTGTTTCTTTCTCTCTCTCTCTCTCTCTC ::: :: :: ::::: :: ::::::::: : :: : :::::: :: :: ::: :: : :::: ::::: ::: MM_69_ AACCATCATCAATGTGAGCTATCCTGGGATTGAAG-CTAGCCAGCAGCTAGTGCTTCGCTCCCGCTCTATCTCTACCTC 170 180 190 200 210 220 230 240 ---------- 55.4% identity in 536 nt overlap (2114-2623:2129-2639); score: 217 E: 2.2e-12 2120 2130 2140 2150 2160 2170 2180 2190 HS_55_ TTCTTCCTATGTGTTGGTTTTGATATTTATGTAATCAAACACATCAGTTTTTCCTTTCTGATTTC-TGACTTTGGGGTCATGC---TGAG :: : :: : : :: ::::: ::::: : : : :: : :: :::: :::: ::: : : ::: ::::: :: :: : MM_69_ TTAATGCTTTTTTTTTTTTTTGCCATTTA---ACTGTATCATCTGAGGTTTTTCTTT--TATTCCGTTTGTTTTGGGTCTAGCATTTGTG 2130 2140 2150 2160 2170 2180 2190 2200 2210 2200 2210 2220 2230 2240 2250 2260 2270 2280 HS_55_ AAAGTCCTTTCCTACCTGAAGATAATACAGTATATACGTTTCTTACTAGTATTTTTGTGGATTTTTAAAATATTTAAATCTTTAGTCCAT : ::::: : :: : : ::: : : :: ::: : : ::: :::: :: :: : :: ::: :: :: : MM_69_ TA-GTCCTCTGTTAAGAGTTATTGATATTCT-TCAACTTTTGTGCATCCTATA--TGTGATTTCTTTCTTTCCTTTAATGGTTTTTCTTT 2220 2230 2240 2250 2260 2270 2280 2290 2290 2300 2310 2320 2330 2340 2350 2360 2370 HS_55_ CTGAACTT-----GTTCTT-CTATCAGAAA-TGCCACATTTAATAAATAATAAGTCCCATGGTATCAGATGGCTGGAAGGACCTCTTTCG : :: : : ::: :: : : :: : :: :: : : : : :::::: : : :::: : :: ::: : : MM_69_ TTTAAATGAGAAAGGTCTCACTGTGTGGGCCTGGCTGATCTAGTGCCTCAGAGGTCCCAAGTGCTGAGATATCACGAGCCACCACACCGG 2300 2310 2320 2330 2340 2350 2360 2370 2380 2380 2390 2400 2410 2420 2430 2440 HS_55_ ---AAACTT---TGTTTAATTC---CATTAATCT----GTGTATTCTTATTCTAATGCTAATAGTTCCACACTAGCTTCCTTTATCTTTT : ::: ::::: :: :: :::: : ::::: ::: : :: : ::: : : :: :: :: :: : : MM_69_ GCCAGGCTTCATTGTTTTCTTAGAACACTAATTTTAGGGTGTAAAGGTATGATTATTTTGATAATCTTAAAC-AG--TCATTAACCAAGA 2390 2400 2410 2420 2430 2440 2450 2460 2470 2450 2460 2470 2480 2490 2500 2510 2520 2530 HS_55_ TTTTCTTTTTTTTTTTTTTTTT-GAGCTGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTACAATGTCACGATCTCGGTTCACCGCAACCT :: : :: :: :: ::::: ::: : ::::: :: : :: :::: : ::: : :: :::: :: :: ::: : :: MM_69_ ATTATTATTATTATTGGTTTTTCGAGACAGGGTTTCTCTGT-GTAGCCCTGACTGTCCTGGAAC-TCAC----TCTGTAGACC--AGGCT 2480 2490 2500 2510 2520 2530 2540 2550 2540 2550 2560 2570 2580 2590 2600 2610 2620 HS_55_ CCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCATCCTCGCGAGTAGCTGGAATTACAGGCATGCGCCACCAC-GCCTAGCTATTT :::: : ::: : ::: : ::::: :: :::: : ::: :::: :::: ::: ::::::::::: ::: ::: :: MM_69_ G-GCCTTGAAC--TCA-GAAATCCGCCTGCTTCTGCCTCCCAAGT-GCTGAGATTAAAGGTGTGCGCCACCACTGCCCGGCTTATT 2560 2570 2580 2590 2600 2610 2620 2630 ---------- 60.1% identity in 193 nt overlap (2952-3142:3235-3415); score: 176 E: 5.8e-09 2960 2970 2980 2990 3000 3010 3020 3030 3040 HS_55_ TCTACTAAAGATACAAAAATTAGCCGGATGCGATGGCACATGCCTGTAATCTCAGCTACTCGGGAGGCTGAGGTAGAAGAATCGCTTGAA : : :::: :: : : :::: : : : ::::::: ::: ::::: ::: :::: ::: : :: : ::: : : :: MM_69_ TTTTCTAAGAATGTGATTGTGAGCCAGGCGTGGTGGCACAGACCTTTAATCCCAG-TACTTCAGAGACAGAAGCAGAGGCAG-GCAGATG 3240 3250 3260 3270 3280 3290 3300 3310 3320 3050 3060 3070 3080 3090 3100 3110 3120 HS_55_ CCGGGGAGGCAGAGGT-TGCAGTGAGCA-AGATGGCGCCACTGCACTCCAGCCTGGGTGACAGAGGGAGACTCCATCTCAAAAAAAAAAA : : :: ::: :: :: :: :: : : ::: : : ::::: :: ::: :: :: ::: ::::::::::: ::: MM_69_ TCTGTTAGTTCAAGGCCTG--GTCTACAGAGCTAGTTCCA--GAAATCCAG----GGCTACACAGAGAAACT--ATCTCAAAAAACAAAC 3330 3340 3350 3360 3370 3380 3390 3400 3130 3140 HS_55_ AAAAAAAAAAGAT ::: ::: :: :: MM_69_ AAACAAACAAAAT 3410 ----------