#NEXUS BEGIN DATA; dimensions ntax=36 nchar=250; format datatype=PROTEIN interleave=yes gap=-; matrix sp_P35457_UPAS_MOUSEUrokinasep ----MGLPRR-LLLLLLLATTCVPASQGLQCMQCE-------SN--QSCL sp_P49616_UPAR_RATUrokinasepla ----MGLLRRRLLLLVVVVTTCVPASQGLRCIQCE-------SN--QDCL sp_Q05588_UPAR_BOVINUrokinasep ----MGQP----LLLLLLVYTYIPGSWGLRCLQCE-------NT--TSCS sp_Q03405_UPAR_HUMANUrokinasep ----MGHPPL--LPLLLLLHTCVPASWGLRCMQCK-------TN--GDCR tr_Q63317RatLy6_Bantigen_Rattu --MNRSCAMKSCVLILLLALLCAERAQGLNCYNCTMI---PFGN--TCSS sp_P09568_LY6C_MOUSELymphocyte --MDSTHATKSCLLILLVALLCAGRAQGLQCYECYGV---PIET--SCP- tr_Q9CXN2Lymphocyteantigen6com --MSATSNMRVFLPVLLAALLGMEQVHSLMCFSCTDQ----KNNI-NCLW sp_Q90986_LY6E_CHICKLymphocyte --------MKAFLFAVLAAVLCVERAHTLICFSCSDA----SSNW-ACLT sp_Q9BZG9_LYNX_HUMANLy_6_neuro ------MTPLLTLILVVLMGLPLA--QALDCHVCA-----YNGD--NCFN tn_AAR00319Ly_6neurotoxin_like ------MTPLLTLFLVVLMGLPLAPVQALDCHVCA-----YNGD--NCFN sp_Q9WVC2_LYNX_MOUSELy_6_neuro ------MTHLLTVFLVALMGLPVA--QALECHVCA-----YNGD--NCFK sp_P35459_LY6D_MOUSELymphocyte --------MKTALLVLLVLAVATSPAWALRCHVCT------NSA--NCKN sp_Q14210_LY6D_HUMANLymphocyte --------MRTALLLLAALAVATGPALTLRCHVCT------SSS--NCKH sp_Q9Z0K7_SLUR_MOUSESecretedLy ------MTLRWAMWLLLLAAWSMGYGEAFRCYTCEQP----TAIN-SCKN sp_P55000_SLUR_HUMANSecretedLy ------MASRWAVQLLLVAAWSMGCGEALKCYTCKEP---MTSA--SCRT sp_P47777_CD59_SAISCCD59glycop ---MGIQGGSVLFGLLLVLAVFCHSGNSLQCYSCPLP----TMESMECTA sp_Q00996_CD59_HSVSASurfacegly --------MYILFTLVLTF-VFCKPIHSLQCYNCSHS----TMQ---CTT sp_P13987_CD59_HUMANCD59glycop ---MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP----TAD---CKT sp_O62680_CD59_PIGCD59glycopro ---MGSKGGFILLWLLSILAVLCHLGHSLQCYNCINP----AGS---CTT sp_P58019_C59B_MOUSECD59Bglyco -----MRAQRGLILLLLLLAVFCSTAVSLKCYNCFQF----VSS---CKI sp_P80965_NXL5_OPHHALongneurot ----------------------------TKCYKTGDR----IIS------ sp_P01380_NXL1_ASTSTLongneurot ----------------------------LSCYLG--Y----KHS------ sp_P82935_TXWW_NAJKAWeaktrypto ----------------------------LTCLNCPEM----FCGK----- sp_O94772_LY6H_HUMANLymphocyte ---MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLT----TNSS--HCT tr_Q86SR0SecretedLy6_uPARrelat ------MQLGTGLLLAAVLSLQLAAAEAIWCHQCTG-----FGG---CSH tr_Q9CWP42410015A16Rikprotein_ --------MAFLVALLVVLGLQLVQSNALTCHVCEAQ----NSYA--CSN sp_O43653_PSCA_HUMANProstatest --------MKAVLLALLMAGLALQPGTALLCYSCKAQ----VSNE-DCLQ tr_Q9CQ112010109I03Rikprotein_ --------MRTHLLWLLPLILLGSSAQALKCHECS--------GIEDCYK sp_Q09022_XEN1_XENLA ----------MRYAIVFFLVCVITLGEALKCVNLQAN---------GIKM tn_AAQ13903 ---------MRTTALLILLVVLVSTGEALQCNTLDGG------------- tr_Q8AV77Hep21protein_Gallusga ---------MKLLFVGLALVLCVGVVEALQCKVCKYKI-P-YVGCFHGAN tr_Q80ZQ0RIKENcDNA1700008E09ge --------MVLGWPLLLVLVLCPGVTGIKDCVFCELT-----DSARCPGT tr_Q9Z1Q3NG25_G6dprotein__Musm -------MNSQLVGILLSALLGVALGHRTRCYDCGGG-----PSNSCKQT tr_Q9UAD1Leukocytemembraneprot --MAKSLFFFAIVLLGIYFGTVELLGTTLQCYRQEKD---------KVQT sp_Q99445_GML_HUMANGlycosyl_ph MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCA------------VIN tr_O96368Sm29_Schistosomamanso --MKSGWEYIGIFLYIMVNILDKQRCHSVRCYVCDYCPIVTSVSISEENN sp_P35457_UPAS_MOUSEUrokinasep VEECALGQ-DLCRTTVLREWQDDRE--LEVVTRGCAHSEKTNRTMS---- sp_P49616_UPAR_RATUrokinasepla VEECALGQ-DLCRTTVLREWEDAEE--LEVVTRGLCHKEKTNRTMS---- sp_Q05588_UPAR_BOVINUrokinasep VEECTPGQ-DLCRTTVLSVWEGGNE--MNVVRKGCTHPDKTNRSMS---- sp_Q03405_UPAR_HUMANUrokinasep VEECALGQ-DLCRTTIVRLWEEGEE--LELVEKSCTHSEKTNRTLS---- tr_Q63317RatLy6_Bantigen_Rattu TATCPYPD-GVCTIQVAEVVVSSVR--LKVKSNLCLPGCPKSPQT----- sp_P09568_LY6C_MOUSELymphocyte AVTCRASD-GFCIAQNIELIEDSQR--RKLKTRQCLSFCPAG-------- tr_Q9CXN2Lymphocyteantigen6com PVSCQEKD-HYCITLSAAAGFGNVN-LGYTLNKGCSPICPSE--N----- sp_Q90986_LY6E_CHICKLymphocyte PVKCAENE-EHCVTTYVGVGIGGK--SGQSISKGCSPVCPS--------- sp_Q9BZG9_LYNX_HUMANLy_6_neuro PMRCPAMV-AYCMTTRTYYTPTRMK-----VSKSCVPRCFETVYDG---- tn_AAR00319Ly_6neurotoxin_like PMRCPAMV-AYCMTTRTYYTPTRMK-----VSKSCVPSCFETVYDG---- sp_Q9WVC2_LYNX_MOUSELy_6_neuro PMRCPAMA-TYCMTTRTYFTPYRMK-----VRKSCVPSCFETVYDG---- sp_P35459_LY6D_MOUSELymphocyte PQVCPSNF-YFCKTVTSVEPLNGNL-----VRKECANSCTSDYSQQG--- sp_Q14210_LY6D_HUMANLymphocyte SVVCPASS-RFCKTTNTVEPLRGNL-----VKKDCAESCTPSYTLQG--- sp_Q9Z0K7_SLUR_MOUSESecretedLy IAQCKMED-TACKTVLETVEAAFPFNHSPMVTRSCSSSCLAT--D----- sp_P55000_SLUR_HUMANSecretedLy ITRCKPED-TACMTTLVTVEAEYPFNQSPVVTRSCSSSCVAT--D----- sp_P47777_CD59_SAISCCD59glycop STNCTSNL-DSCLIAKAG-SGVYYRCWK---FDDCSFKRISNQ------- sp_Q00996_CD59_HSVSASurfacegly STSCTSNL-DSCLIAKAG-SGVYYRCWK---FDDCSFKRISNQ------- sp_P13987_CD59_HUMANCD59glycop AVNCSSDF-DACLITKAG-LQVYNKCWK---FEHCNFNDVTTR------- sp_O62680_CD59_PIGCD59glycopro AMNCSHNQ-DACIFVEAVPPKTYYQCWR---FDECNFDFISRN------- sp_P58019_C59B_MOUSECD59Bglyco NTTCSPNL-DSCLYAVAG-RQVYQQCWK---LSDCNSNYIMSR------- sp_P80965_NXL5_OPHHALongneurot -EACPPGQ-DLCYMKTWCDVFCGTRGRV--IELGCTATCP---------- sp_P01380_NXL1_ASTSTLongneurot -QTCPPGE-NVCFVKTWCDGFCNTRGER--IIMGCAATCP---------- sp_P82935_TXWW_NAJKAWeaktrypto FQICRNGE-KICFKKLHQR---RPLSWR--YIRGCADTCP---------- sp_O94772_LY6H_HUMANLymphocyte PKQCQPSD-TVCASVRITDPSSSRK--DHSVNKMCASSCDFVKRHFFS-- tr_Q86SR0SecretedLy6_uPARrelat GSRCLRDS-THCVTTATRVLSNTED--LPLVTKMCHIGCPDIPS------ tr_Q9CWP42410015A16Rikprotein_ PSQCPGEK-KFCLLAVTRIFERFFY-----VSKQCTRRCPTPVVSPPSTN sp_O43653_PSCA_HUMANProstatest VENCTQLG-EQCWTARIRAVGLLTV-----ISKGCSLNCVDDSQD----- tr_Q9CQ112010109I03Rikprotein_ PKTCSSQS-LYCLTNWYTPPGQQTT-----VTKTCAYTCPDINHVT---- sp_Q09022_XEN1_XENLA TQECAKED-TKCLTLRSLKKTLKFC----ASGRTCTTMKIMSLP------ tn_AAQ13903 TEECPSDDYDACVHYKFEDEEFKGCG----IQDECTAAEDDEPE------ tr_Q8AV77Hep21protein_Gallusga ETTCERRE-RCAIIKTSLGKVTLYYQQGCTSALNCGRERAS--------- tr_Q80ZQ0RIKENcDNA1700008E09ge HMRCGDDE-DCFTGHGVAQGVGPIINKGCVHSTSCGREEPISYMG----- tr_Q9Z1Q3NG25_G6dprotein__Musm VITCGEGERCGFLDRKPQPSSEQAKQPSATLSHHYPACVATHHCN----- tr_Q9UAD1Leukocytemembraneprot PKNCSSGE--QCASVKDKAGKVTKDCATTEMCKKEKNVTILD-------- sp_Q99445_GML_HUMANGlycosyl_ph DFNCPNIRVCPYHIRRCMTISIRINSRELLVYKNCTNNCTFVYAAEQPPE tr_O96368Sm29_Schistosomamanso CTSCSTAGYNYSIHRICVFKDGIPINFPNENRTQCNTDLCNGLTVDNTGK sp_P35457_UPAS_MOUSEUrokinasep ----------------------------------------------YRMG sp_P49616_UPAR_RATUrokinasepla ----------------------------------------------YRMG sp_Q05588_UPAR_BOVINUrokinasep ----------------------------------------------YRAA sp_Q03405_UPAR_HUMANUrokinasep ----------------------------------------------YRTG tr_Q63317RatLy6_Bantigen_Rattu ------------------------------------------PEVLGTVV sp_P09568_LY6C_MOUSELymphocyte ------------------------------------------VPIKDPNI tr_Q9CXN2Lymphocyteantigen6com ------------------------------------------VNLNLGVA sp_Q90986_LY6E_CHICKLymphocyte ------------------------------------------AGINLGIA sp_Q9BZG9_LYNX_HUMANLy_6_neuro ----------------------------------------------YSKH tn_AAR00319Ly_6neurotoxin_like ----------------------------------------------YSKH sp_Q9WVC2_LYNX_MOUSELy_6_neuro ----------------------------------------------YSKH sp_P35459_LY6D_MOUSELymphocyte ---------------------------------------------HVSSG sp_Q14210_LY6D_HUMANLymphocyte ---------------------------------------------QVSSG sp_Q9Z0K7_SLUR_MOUSESecretedLy ----------------------------------------------PDGI sp_P55000_SLUR_HUMANSecretedLy ----------------------------------------------PDSI sp_P47777_CD59_SAISCCD59glycop ----------------------------------------------LSET sp_Q00996_CD59_HSVSASurfacegly ----------------------------------------------LSET sp_P13987_CD59_HUMANCD59glycop ----------------------------------------------LREN sp_O62680_CD59_PIGCD59glycopro ----------------------------------------------LAEK sp_P58019_C59B_MOUSECD59Bglyco ----------------------------------------------LDVA sp_P80965_NXL5_OPHHALongneurot ----------------------------------------------TVKP sp_P01380_NXL1_ASTSTLongneurot ----------------------------------------------TAKS sp_P82935_TXWW_NAJKAWeaktrypto ----------------------------------------------VGKP sp_O94772_LY6H_HUMANLymphocyte ------------------------------------------DYLMGFIN tr_Q86SR0SecretedLy6_uPARrelat ----------------------------------------------LGLG tr_Q9CWP42410015A16Rikprotein_ PP----S-----------------------------------EPKEFLIE sp_O43653_PSCA_HUMANProstatest ----------------------------------------------YYVG tr_Q9CQ112010109I03Rikprotein_ -------------------------------------------------- sp_Q09022_XEN1_XENLA -------------------------------------------------- tn_AAQ13903 -------------------------------------------------- tr_Q8AV77Hep21protein_Gallusga ------------------------------------------------DA tr_Q80ZQ0RIKENcDNA1700008E09ge -------------------------------------------------- tr_Q9Z1Q3NG25_G6dprotein__Musm ------------------------------------------QVAIESVG tr_Q9UAD1Leukocytemembraneprot -------------------------------------------------- sp_Q99445_GML_HUMANGlycosyl_ph APG--------------------------------------------KIF tr_O96368Sm29_Schistosomamanso IPSVPIANPFRCYTCLNCTKSNQKVLSGCGACVTTRGSGIISKFCGTTCE sp_P35457_UPAS_MOUSEUrokinasep SMIISLTETVCATNLCNRPRPGARGRAFPQGRYLECASCTSLDQSCERGR sp_P49616_UPAR_RATUrokinasepla SVIVSLTETVCATNLCNRPRPGARGRPFPRGRYLECASCTSLDQSCERGR sp_Q05588_UPAR_BOVINUrokinasep DQIITLSETVCRSDLCNKPNPG-RDATVSRNRYLECASCSSTDLSCERGW sp_Q03405_UPAR_HUMANUrokinasep LKITSLTEVVCGLDLCNQGNSG-RAVTYSRSRYLECISCGSSDMSCERGR tr_Q63317RatLy6_Bantigen_Rattu H----VNTDCCNTDLCNAAGPTGGSTWTMAGVLLFILGSVLLQTLL---- sp_P09568_LY6C_MOUSELymphocyte R----ERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVILQTLL---- tr_Q9CXN2Lymphocyteantigen6com S----VNSYCCQSSFCNFSARASDFVPVSHYWALDSCLACWLCCS----- sp_Q90986_LY6E_CHICKLymphocyte A----ASVYCCDSFLCNISGSSS--VKASYAVLALGILVSFVYVLRARE- sp_Q9BZG9_LYNX_HUMANLy_6_neuro A------------------------------------------------- tn_AAR00319Ly_6neurotoxin_like A----STTSCCQYDLCNS---ASLAIPATLALAPVLLATLWGLL------ sp_Q9WVC2_LYNX_MOUSELy_6_neuro A----SATSCCQYYLCNG---AGFATPVTLALVPALLATFWSLL------ sp_P35459_LY6D_MOUSELymphocyte S----EVTQCCQTDLCNERLVSAAPGHALLSSVTLGLATSLSLLTVMALC sp_Q14210_LY6D_HUMANLymphocyte T----SSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALSLLAVILAP sp_Q9Z0K7_SLUR_MOUSESecretedLy G--VAHPVFCCFRDLCNSGFPG---------------------FVAGL-- sp_P55000_SLUR_HUMANSecretedLy G--AAHLIFCCFRDLCNSEL------------------------------ sp_P47777_CD59_SAISCCD59glycop Q----LKYHCCKKNLCNVKEV---LENGGTTLSKKTILLLVTPFLAAAWS sp_Q00996_CD59_HSVSASurfacegly Q----LKYHCCKKNLCNVNKG---IENIKRTISDKALLLLAL-FLVTAWN sp_P13987_CD59_HUMANCD59glycop E----LTYYCCKKDLCNFNEQ---LENGGTSLSEKTVLLLVTPFLAAAWS sp_O62680_CD59_PIGCD59glycopro K----LKYNCCRKDLCNKSD---------ATISSGKTALLVILLLVATWH sp_P58019_C59B_MOUSECD59Bglyco G----IQSKCCQWGLCNKNLDGLEEPNNAETSSLRKTALLGTSVLVAILK sp_P80965_NXL5_OPHHALongneurot H----EQITCCSTDNCDPHHKMLQ-------------------------- sp_P01380_NXL1_ASTSTLongneurot G----VHIACCSTD------------------------------------ sp_P82935_TXWW_NAJKAWeaktrypto Y----EMIECCSTDKCNR-------------------------------- sp_O94772_LY6H_HUMANLymphocyte SGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP---- tr_Q86SR0SecretedLy6_uPARrelat P---YVSIACCQTSLCNHD------------------------------- tr_Q9CWP42410015A16Rikprotein_ KPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFM sp_O43653_PSCA_HUMANProstatest K----KNITCCDTDLCNASGAHALQPAAAILALLPALGLLLWGPGQL--- tr_Q9CQ112010109I03Rikprotein_ ---ANSKSSCCNTDLCNSARN------LHVSWGLLALGLCYIYLSQ---- sp_Q09022_XEN1_XENLA ----GEQITCCEGNMCNA-------------------------------- tn_AAQ13903 ----YPMVQCCSEDLCN--------------------------------- tr_Q8AV77Hep21protein_Gallusga ESRLTSRYSCCETDLCNEKWDDDPTD------------------------ tr_Q80ZQ0RIKENcDNA1700008E09ge -LTYSLTTTCCSGHLCNKGTGLSTGATSLSLGLQLLLGLLLLLQYWL--- tr_Q9Z1Q3NG25_G6dprotein__Musm DVTFTTQKNCCFGDLCNSAVASSVTPLCILAAAVTTLAWLLPGL------ tr_Q9UAD1Leukocytemembraneprot ---VTGTIKCCKKDLCNSGHSVTNGHFTVIIAVSACLSFFLTSL------ sp_Q99445_GML_HUMANGlycosyl_ph KTNSFYWVCCCNSMVCNAGGPTNLERDMLPDEVTEEELPEGTVRLGVSKL tr_O96368Sm29_Schistosomamanso RLYIDDQISCCSTDLCNGMTKLSIHRHVIIVLFVCIGISKYIL------- sp_P35457_UPAS_MOUSEUrokinasep EQSLQCRYPTEHCIEVVTLQS---TESKLP-------------------- sp_P49616_UPAR_RATUrokinasepla EQSLQCRYPTEHCIEVVTLQS---TERSVKDEPYTKGCGSLPGCPGTAGF sp_Q05588_UPAR_BOVINUrokinasep DQTMQCLKSRDQCVDVITHRSLKEN---PGDERHIRGCGILPGCPGPTGF sp_Q03405_UPAR_HUMANUrokinasep HQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGF tr_Q63317RatLy6_Bantigen_Rattu -------------------------------------------------- sp_P09568_LY6C_MOUSELymphocyte -------------------------------------------------- tr_Q9CXN2Lymphocyteantigen6com -------------------------------------------------- sp_Q90986_LY6E_CHICKLymphocyte -------------------------------------------------- sp_Q9BZG9_LYNX_HUMANLy_6_neuro -------------------------------------------------- tn_AAR00319Ly_6neurotoxin_like -------------------------------------------------- sp_Q9WVC2_LYNX_MOUSELy_6_neuro -------------------------------------------------- sp_P35459_LY6D_MOUSELymphocyte L------------------------------------------------- sp_Q14210_LY6D_HUMANLymphocyte SL------------------------------------------------ sp_Q9Z0K7_SLUR_MOUSESecretedLy -------------------------------------------------- sp_P55000_SLUR_HUMANSecretedLy -------------------------------------------------- sp_P47777_CD59_SAISCCD59glycop RHP----------------------------------------------- sp_Q00996_CD59_HSVSASurfacegly FPL----------------------------------------------- sp_P13987_CD59_HUMANCD59glycop LHP----------------------------------------------- sp_O62680_CD59_PIGCD59glycopro FCL----------------------------------------------- sp_P58019_C59B_MOUSECD59Bglyco FCF----------------------------------------------- sp_P80965_NXL5_OPHHALongneurot -------------------------------------------------- sp_P01380_NXL1_ASTSTLongneurot -------------------------------------------------- sp_P82935_TXWW_NAJKAWeaktrypto -------------------------------------------------- sp_O94772_LY6H_HUMANLymphocyte -------------------------------------------------- tr_Q86SR0SecretedLy6_uPARrelat -------------------------------------------------- tr_Q9CWP42410015A16Rikprotein_ VLTANGLSALCLL------------------------------------- sp_O43653_PSCA_HUMANProstatest -------------------------------------------------- tr_Q9CQ112010109I03Rikprotein_ -------------------------------------------------- sp_Q09022_XEN1_XENLA -------------------------------------------------- tn_AAQ13903 -------------------------------------------------- tr_Q8AV77Hep21protein_Gallusga -------------------------------------------------- tr_Q80ZQ0RIKENcDNA1700008E09ge -------------------------------------------------- tr_Q9Z1Q3NG25_G6dprotein__Musm -------------------------------------------------- tr_Q9UAD1Leukocytemembraneprot -------------------------------------------------- sp_Q99445_GML_HUMANGlycosyl_ph LLSFASIIVSNILP------------------------------------ tr_O96368Sm29_Schistosomamanso -------------------------------------------------- ; end; begin MrBayes; outgroup 20; prset aamodelpr=mixed; lset aamodel=jones; mcmc ngen=500000 printfreq=500 samplefreq=100 burnin=10000 nchains=4 savebrlens=yes; sumt burnin=100 contype=halfcompat showtreeprobs=yes; end;