Gene Name Locus Link ID Array Status ABL1 25 Uncovered ABL2 27 Covered- optimized set ACVR1B 91 Covered- optimized set ADPRT 142 Covered- optimized set AF1Q 10962 Covered- optimized set AF3p21 51517 Covered- optimized set AF5q31 27125 Covered- optimized set AKT1 207 Covered- optimized set AKT2 208 Covered- optimized set AKT3 10000 Uncovered ALCAM 214 Uncovered ALK 238 Uncovered APC 324 Covered- optimized set APEX1 328 Covered- initial set APEX2 27301 Covered- optimized set APOC1 341 Covered- optimized set ARHA 387 Uncovered ARHC 389 Covered- initial set ARHGDIB 397 Covered- optimized set ARHGEF12 23365 Covered- optimized set ARHGEF7 8874 Uncovered ARHH 399 Uncovered ARNT 405 Covered- optimized set ATF1 466 Uncovered ATM 472 Covered- initial set ATR 545 Covered- optimized set B2M 567 Covered- optimized set BAD 572 Covered- optimized set BAK1 578 Covered- initial set BARD1 580 Covered- optimized set BAX 581 Covered- optimized set BCCIP 56647 Covered- optimized set BCL10 8915 Covered- optimized set BCL11A 53335 Covered- initial set BCL11B 64919 Covered- initial set BCL2 596 Covered- initial set BCL2L1 598 Covered- optimized set BCL3 602 Covered- optimized set BCL6 604 Covered- optimized set BCL7A 605 Covered- optimized set BCL9 607 Covered- optimized set BCR 613 Covered- optimized set BIRC3 330 Covered- initial set BLM 641 Covered- optimized set BMPR1A 657 Covered- optimized set BRAF 673 Uncovered BRCA1 672 Covered- optimized set BRCA2 675 Covered- optimized set BRD4 23476 Covered- optimized set BTG1 694 Covered- optimized set BUB1 699 Covered- optimized set CASP3 836 Covered- optimized set CASP6 839 Covered- optimized set CASP7 840 Covered- optimized set CASP8 841 Covered- optimized set CASP9 842 Covered- initial set CAV1 857 Covered- optimized set CBFA2T1 862 Covered- optimized set CBFA2T3 863 Uncovered CBFB 865 Covered- optimized set CCND1 595 Covered- optimized set CCNE1 898 Uncovered CD9 928 Covered- initial set CDC20 991 Covered- optimized set CDC25A 993 Covered- initial set CDC25B 994 Covered- optimized set CDC25C 995 Covered- optimized set CDC42 998 Covered- optimized set CDC45L 8318 Covered- optimized set CDC6 990 Covered- initial set CDH1 999 Covered- optimized set CDH5 1003 Covered- optimized set CDH8 1008 Covered- optimized set CDK4 1019 Covered- initial set CDK6 1021 Uncovered CDKN1A 1026 Covered- initial set CDKN1B 1027 Covered- optimized set CDKN1C 1028 Covered- initial set CDKN2A 1029 Covered- optimized set CDX2 1045 Covered- optimized set CEBPA 1050 Covered- initial set CEP1 11064 Covered- optimized set CFLAR 8837 Covered- optimized set CHEK1 1111 Covered- initial set CHEK2 11200 Covered- optimized set CHES1 1112 Uncovered CHIC2 26511 Covered- initial set CHL1 10752 Covered- optimized set CHN1 1123 Uncovered CHUK 1147 Covered- initial set COL11A2 1302 Uncovered COL1A1 1277 Covered- optimized set COPEB 1316 Covered- initial set COX6C 1345 Covered- optimized set CREBBP 1387 Covered- optimized set CTCF 10664 Covered- optimized set CTNNA1 1495 Uncovered CTNNA2 1496 Uncovered CTNNAL1 8727 Covered- optimized set CTNNB1 1499 Covered- optimized set CTNNBIP1 56998 Covered- optimized set CYLD 1540 Covered- optimized set DAXX 1616 Uncovered DAZ2 57055 Uncovered DDB1 1642 Covered- initial set DDB2 1643 Covered- optimized set DDIT3 1649 Uncovered DDX10 1662 Uncovered DEK 7913 Covered- optimized set DFFA 1676 Covered- initial set DLEU1 10301 Covered- optimized set DNMT1 1786 Covered- optimized set DNMT2 1787 Covered- optimized set DNMT3B 1789 Covered- optimized set DNMT3L 29947 Covered- optimized set EFNB3 1949 Covered- optimized set EGFR 1956 Uncovered ELK1 2002 Covered- initial set ELL 8178 Covered- optimized set EP300 2033 Covered- optimized set EPHA2 1969 Covered- optimized set EPHB2 2048 Covered- optimized set EPS15 2060 Covered- optimized set ERBB2 2064 Covered- optimized set ERBB4 2066 Uncovered ERCC1 2067 Uncovered ERCC3 2071 Covered- optimized set ERCC4 2072 Covered- optimized set ERCC5 2073 Covered- optimized set ERG 2078 Uncovered ETV1 2115 Covered- optimized set ETV4 2118 Covered- optimized set ETV6 2120 Uncovered EWSR1 2130 Covered- initial set EXT1 2131 Uncovered EXT2 2132 Uncovered FACL6 23305 Uncovered FADD 8772 Covered- optimized set FAF1 11124 Uncovered FANCA 2175 Covered- optimized set FANCC 2176 Covered- optimized set FANCD2 2177 Covered- optimized set FANCE 2178 Covered- optimized set FANCF 2188 Covered- initial set FANCG 2189 Covered- initial set FAP 2191 Covered- initial set FGF13 2258 Covered- optimized set FGF2 2247 Covered- optimized set FGFR1 2260 Covered- optimized set FGFR2 2263 Covered- optimized set FGFR3 2261 Covered- optimized set FH 2271 Covered- initial set FHIT 2272 Covered- optimized set FLI1 2313 Uncovered FLJ10060 55065 Covered- initial set FLT4 2324 Covered- optimized set FOP 11116 Covered- optimized set FOS 2353 Covered- optimized set FOXA1 3169 Covered- optimized set FOXC1 2296 Covered- optimized set FOXO1A 2308 Covered- optimized set FOXO3A 2309 Covered- optimized set FRAP1 2475 Covered- optimized set FSTL3 10272 Covered- optimized set FUS 2521 Covered- optimized set GADD45A 1647 Covered- optimized set GAS7 8522 Covered- optimized set GGH 8836 Covered- optimized set GHR 2690 Covered- optimized set GMPS 8833 Uncovered GNAS 2778 Covered- optimized set GNB1 2782 Covered- optimized set GNGT1 2792 Covered- initial set GOLGA5 9950 Covered- initial set GPHN 10243 Uncovered GRAF 23092 Uncovered GRB2 2885 Covered- initial set GRO1 2919 Covered- initial set GSTP1 2950 Uncovered H4FM 8294 Covered- optimized set HDAC1 3065 Covered- optimized set HDAC2 3066 Covered- optimized set HDAC3 8841 Covered- optimized set HDAC4 9759 Uncovered HDAC5 10014 Covered- initial set HDAC6 10013 Covered- optimized set HDAC9 9734 Uncovered HEI10 57820 Covered- optimized set HIF1A 3091 Covered- optimized set HIP1 3092 Covered- optimized set HLF 3131 Covered- optimized set HMGA2 8091 Covered- optimized set HOXA13 3209 Covered- initial set HOXA9 3205 Covered- optimized set HOXD11 3237 Covered- optimized set HRAS 3265 Uncovered HSPA8 3312 Covered- optimized set HSPCA 3320 Covered- optimized set HSPCB 3326 Covered- optimized set ICAM1 3383 Uncovered IGF1R 3480 Uncovered IL10 3586 Covered- optimized set IL12RB1 3594 Covered- optimized set IL12RB2 3595 Covered- optimized set IL21R 50615 Covered- optimized set IL8 3576 Covered- optimized set ILK 3611 Covered- initial set ING1 3621 Covered- optimized set IRF4 3662 Covered- optimized set IRTA1 83417 Covered- optimized set ISG20 3669 Covered- initial set ITGA3 3675 Covered- optimized set ITGA4 3676 Covered- optimized set ITGA5 3678 Covered- optimized set ITGB1 3688 Covered- optimized set ITGB2 3689 Covered- optimized set ITGB3 3690 Covered- optimized set JAK2 3717 Covered- optimized set JUN 3725 Covered- optimized set KISS1 3814 Covered- optimized set KIT 3815 Covered- optimized set KRAS2 3845 Covered- optimized set LAF4 3899 Uncovered LCP1 3936 Covered- initial set LEF1 51176 Covered- optimized set LHFP 10186 Uncovered LHX2 9355 Covered- optimized set LIF 3976 Covered- optimized set LIG4 3981 Covered- optimized set LISCH7 51599 Covered- optimized set LMNA 4000 Covered- optimized set LMNB1 4001 Covered- optimized set LMNB2 84823 Uncovered LMO1 4004 Covered- optimized set LMO2 4005 Covered- optimized set LPP 4026 Uncovered LYL1 4066 Covered- optimized set MAD 4084 Covered- optimized set MAD1L1 8379 Uncovered MADH1 4086 Covered- optimized set MADH4 4089 Covered- initial set MADH6 4091 Covered- initial set MADH9 4093 Covered- optimized set MAF 4094 Covered- optimized set MAGEA1 4100 Uncovered MALT1 10892 Covered- optimized set MAP2K1 5604 Covered- optimized set MAP2K2 5605 Covered- optimized set MAP2K4 6416 Covered- optimized set MAPK1 5594 Covered- initial set MAPK8 5599 Covered- optimized set MAPT 4137 Covered- optimized set MAX 4149 Covered- optimized set MBD4 8930 Covered- optimized set MC1R 4157 Covered- initial set MCAM 4162 Covered- optimized set MDM2 4193 Covered- optimized set MDS1 4197 Uncovered MEN1 4221 Covered- optimized set MEP1A 4224 Covered- optimized set MEP1B 4225 Covered- initial set MET 4233 Covered- optimized set MGMT 4255 Uncovered MHC2TA 4261 Covered- initial set MITF 4286 Covered- optimized set MKI67 4288 Covered- optimized set MKNK1 8569 Covered- optimized set MKNK2 2872 Uncovered MLANA 2315 Covered- optimized set MLF1 4291 Covered- optimized set MLH1 4292 Covered- optimized set MLH3 27030 Covered- initial set MLL 4297 Covered- optimized set MLLT1 4298 Covered- optimized set MLLT10 8028 Uncovered MLLT2 4299 Covered- optimized set MLLT3 4300 Uncovered MLLT4 4301 Uncovered MLLT6 4302 Covered- initial set MLLT7 4303 Covered- optimized set MMP14 4323 Covered- optimized set MMP16 4325 Uncovered MMP2 4313 Covered- optimized set MMP24 10893 Covered- optimized set MMP25 64386 Covered- initial set MMP9 4318 Covered- initial set MN1 4330 Covered- initial set MORF 23522 Covered- optimized set MRE11A 4361 Covered- optimized set MSF 10801 Covered- optimized set MSH2 4436 Covered- optimized set MSH3 4437 Uncovered MSH6 2956 Covered- optimized set MST1R 4486 Covered- optimized set MTAP 4507 Covered- optimized set MUTYH 4595 Covered- initial set MYC 4609 Covered- optimized set MYCL1 4610 Covered- optimized set MYCN 4613 Covered- optimized set MYH11 4629 Covered- optimized set MYO18B 84700 Uncovered NACA 4666 Covered- optimized set NBS1 4683 Covered- optimized set NCOA2 10499 Covered- optimized set NCOA3 8202 Covered- optimized set NCOA4 8031 Covered- initial set NF1 4763 Uncovered NF2 4771 Covered- optimized set NFKB1 4790 Covered- optimized set NFKBIA 4792 Covered- initial set NFYA 4800 Covered- initial set NFYB 4801 Covered- optimized set NFYC 4802 Covered- optimized set NGFB 4803 Covered- optimized set NGFR 4804 Covered- optimized set NME1 4830 Covered- initial set NMT1 4836 Covered- optimized set NMT2 9397 Covered- optimized set NPM1 4869 Covered- initial set NR2C2 7182 Covered- optimized set NR4A3 8013 Covered- optimized set NRAS 4893 Covered- optimized set NSD1 64324 Covered- optimized set NTRK1 4914 Covered- optimized set NTRK3 4916 Uncovered NUMA1 4926 Covered- initial set NUP214 8021 Covered- optimized set NUP98 4928 Covered- optimized set ODC1 4953 Covered- optimized set OLIG2 10215 Covered- optimized set PAK1 5058 Covered- optimized set PAK2 5062 Covered- optimized set PAX3 5077 Covered- optimized set PAX5 5079 Uncovered PAX6 5080 Covered- initial set PAX7 5081 Covered- optimized set PAX8 7849 Covered- optimized set PBX1 5087 Uncovered PCM1 5108 Covered- initial set PCNA 5111 Covered- optimized set PDGFB 5155 Covered- optimized set PDGFRA 5156 Covered- optimized set PDGFRB 5159 Covered- initial set PDK1 5163 Covered- optimized set PICALM 8301 Covered- optimized set PIK3CA 5920 Covered- optimized set PIK3CG 5294 Covered- optimized set PIM1 5292 Covered- optimized set PIM2 11040 Covered- optimized set PLD1 5337 Covered- optimized set PML 5371 Covered- optimized set PMS1 5378 Covered- optimized set PMS2 5395 Covered- optimized set PMX1 5396 Covered- optimized set PNUTL1 5413 Uncovered POLB 5423 Covered- initial set POLD1 5424 Covered- optimized set POLD2 5425 Covered- optimized set POLH 5429 Covered- initial set POMC 5443 Covered- optimized set POU2AF1 5450 Covered- optimized set POU2F1 5451 Covered- optimized set PPARG 5468 Covered- optimized set PPM1D 8493 Covered- optimized set PPP1R3A 5506 Covered- optimized set PPP2R1A 5518 Covered- optimized set PPP2R1B 5519 Covered- optimized set PPP2R5D 5528 Covered- initial set PRAME 23532 Covered- optimized set PRC17 84218 Uncovered PRDM2 7799 Covered- optimized set PRKAR1A 5573 Covered- initial set PRKDC 5591 Uncovered PTCH 5727 Uncovered PTEN 5728 Covered- optimized set PTGS1 5742 Covered- optimized set PTGS2 5743 Covered- initial set PTK2 5747 Uncovered PTPRR 5801 Covered- optimized set RACGAP1 29127 Covered- optimized set RAD50 10111 Covered- optimized set RAD51 5888 Covered- optimized set RAD51L1 5890 Uncovered RAD52 5893 Covered- optimized set RAD54B 25788 Covered- optimized set RAD54L 8438 Uncovered RAF1 5894 Covered- optimized set RALA 5898 Covered- initial set RALBP1 10928 Covered- optimized set RALGDS 5900 Covered- optimized set RAP1GDS1 5910 Uncovered RARA 5914 Covered- initial set RB1 5925 Covered- optimized set RB1CC1 9821 Covered- initial set RBL2 5934 Covered- initial set REL 5966 Covered- optimized set RET 5979 Covered- initial set RIPK2 8767 Covered- optimized set RNF6 6049 Covered- optimized set RPL22 6146 Covered- optimized set RPS6KA1 6195 Covered- optimized set RUNX1 861 Uncovered RXRA 6256 Covered- optimized set S100A6 6277 Uncovered S100B 6285 Covered- initial set SDHB 6390 Covered- optimized set SDHC 6391 Covered- optimized set SDHD 6392 Covered- initial set SEPT6 23157 Covered- optimized set SET 6418 Covered- optimized set SH3GL1 6455 Covered- optimized set SHC1 6464 Covered- optimized set SMARCA4 6597 Covered- optimized set SMARCB1 6598 Covered- initial set SMOH 6608 Covered- optimized set SOS1 6654 Covered- optimized set SPARC 6678 Covered- optimized set SPHK1 8877 Covered- optimized set SPHK2 56848 Uncovered SRC 6714 Covered- initial set SSH3BP1 10006 Covered- optimized set SSX1 6756 Covered- optimized set SSX2 6757 Covered- optimized set STAT1 6772 Covered- optimized set STAT3 6774 Covered- optimized set STAT5B 6777 Covered- optimized set STK11 6794 Covered- optimized set SUFU 51684 Covered- optimized set TAF15 8148 Covered- optimized set TAL1 6886 Covered- optimized set TAL2 6887 Covered- optimized set TAP1 6890 Uncovered TCF1 6927 Uncovered TCF12 6938 Uncovered TCL1A 8115 Covered- optimized set TEAD4 7004 Covered- optimized set TEC 7006 Covered- optimized set TERC 7015 Covered- optimized set TFAP2A 7020 Covered- optimized set TFG 10342 Covered- optimized set TFRC 7037 Covered- optimized set TGFA 7039 Covered- optimized set TGFB1 7040 Covered- optimized set TGFB2 7042 Covered- optimized set TGFB3 7043 Covered- optimized set TGFBR1 7046 Covered- initial set TGFBR2 7048 Covered- initial set TGIF 7050 Covered- optimized set TGIF2 60436 Covered- initial set THBD 7056 Covered- optimized set TIF1 8805 Covered- initial set TIMP1 7076 Covered- initial set TIMP2 7077 Covered- initial set TIMP3 7078 Covered- optimized set TIMP4 7079 Uncovered TLX1 3195 Covered- optimized set TLX3 30012 Covered- optimized set TNC 3371 Covered- optimized set TNF 7142 Covered- optimized set TNFRSF10A 8797 Covered- optimized set TNFRSF10B 8795 Covered- optimized set TNFRSF6 355 Covered- optimized set TNFSF6 356 Covered- optimized set TOP1 7150 Uncovered TOP2A 7153 Covered- initial set TOP2B 7155 Covered- optimized set TOR 47396 Covered- optimized set TPM3 7170 Covered- optimized set TPR 7175 Covered- optimized set TRAF1 7185 Covered- initial set TRIM33 51592 Covered- optimized set TRIP11 9321 Covered- initial set TRPM1 4308 Covered- optimized set TSC1 7248 Covered- optimized set TSC2 7249 Covered- optimized set TSHR 7253 Uncovered TTC4 7268 Covered- optimized set VEGF 7422 Uncovered WHSC1L1 54904 Covered- optimized set WNT1 7471 Covered- initial set WNT11 7841 Covered- optimized set WNT2 7472 Covered- optimized set WNT3 7473 Covered- optimized set WNT5A 7474 Covered- optimized set WNT6 7475 Uncovered WNT8B 7479 Covered- initial set WRN 7486 Covered- optimized set XPA 7507 Covered- optimized set XPC 7508 Covered- optimized set XRCC1 7515 Covered- optimized set XRCC2 7516 Covered- optimized set XRCC4 7517 Covered- optimized set XRCC4 7518 Uncovered XRCC5 7520 Covered- initial set YWHAH 7533 Covered- optimized set ZNF145 7704 Covered- optimized set ZNF198 7750 Covered- optimized set ZNF220 7994 Covered- optimized set ZNF278 23598 Covered- optimized set ZNF384 171017 Uncovered ZNF42 7593 Covered- optimized set