Supplementary Table B5. High scoring sites for ATF (M00338) found in promoters of cell cycle-regulated genes reported by Whitfield et al. (2002). (1) 23354 KIAA0841 1 GTGACGTCATCG - -56 145010 2 GTGACGTCAGAG + -42 46576 3 ATGACGTCACTG + -65 33613 4 CTGACGTCACGG - -33 7099 (2) 9156 EXO1 1 GTGACGTCAACG - -85 189885 2 TTGACGTCACAT + -94 1547 (3) 4162 MCAM 1 GTGACGTCAGTG - -625 130421 2 CTGACGTCACTC + -634 24484 (4) 9055 PRC1 1 GTGACGTCATCC + -162 105243 2 ATGACGTCACTG - -153 33613 (5) 64225 FLJ23293 1 TTGACGTCAGTG + -23 87160 2 CTGACGTCAAAC - -14 20768 (6) 10403 HEC 1 ATGACGTCAGCG + -74 84693 2 CTGACGTCATTA - -65 6167 (7) 998 CDC42 1 CTGACGTCAGCG - -15 85001 2 CTGACGTCAGGT + -24 1450 (8) 79700 FLJ13287 1 TTGACGTCATTG + -126 77978 2 ATGACGTCAAAA - -117 2873 (9) 79866 FLJ22624 1 ATGACGTCAACC - -1065 72011 2 TTGACGTCATGA + -1074 1654 (10) 890 CCNA2 1 TTGACGTCATTC - -231 56594 2 ATGACGTCAAGG + -240 16802 (11) 10921 RNPS1 1 CTGACGTCAGAG + -32 24426 2 CTGACGTCAGAG - -23 24426 3 ATGACGTAAACG - -73 23983 4 TTTACGTCATCG + -82 19 (12) 5504 PPP1R2 1 GTGACGTCACTC - -279 46687 2 GTGACGTCACCT + -288 8057 (13) 6456 SH3GL2 1 TTGACGTCAGAG + -133 31126 2 CTGACGTCAAGG - -124 16863 (14) 51042 LOC51042 1 ATGACGTCACTC - -63 24395 2 GTGACGTCATCA + -72 14615 3 CTGACGTCGACG + -117 28 4 TCGACGTCAGTG - -108 17 (15) 5889 RAD51C 1 GTGACGTCAGAC - -22 33803 2 CTGACGTCACGC + -31 5152 (16) 65057 24432 1 GTGACGTCAAGG + -100 32155 2 TTGACGTCACGC - -91 6566 (17) 8568 D21S2056E 1 GTGACGTCACAG - -61 22973 2 GTGACGTCACGC + -70 9825 (18) 26118 DKFZP564A122 1 GTGACGTCACAG - -22 22973 2 ATGACGTATTTG - -714 6652 3 GTGACGTCACGT + -31 1364 (19) 51343 FZR1 1 GTGACGTCTCCC - -262 26189 2 GTGACGTTTGTA + -549 1190 3 GCGACGTCAATG + -489 30 (20) 80321 BITE 1 CTGACGTCTTCC + -317 24912 2 TTGACGACAGTT - -506 631 (21) 1062 CENPE 1 GTGACGTCATGG - -40 24556 2 ATGACGTCACGA + -49 713 (22) 29896 HSU53209 1 GTGACGTCACAG + -95 22973 2 GTGACGTCACGA - -86 1364 (23) 84961 MGC15482 1 GTGACGTCAGGC + -1052 19920 2 CTGACGTCACTT - -1043 3400 (24) 9212 STK12 1 GTGACGTAAGTC - -114 22880 (25) 8772 FADD 1 GTGACGTCAGCA + -848 16336 2 CTGACGTCACCA - -839 4225 (26) 25896 DKFZP434B168 1 GTGACGTCAGTT - -186 13145 2 CTGACGTCACGC + -195 5152 (27) 4928 NUP98 1 GTGACGTCACAC - -260 16673 2 GTGACGTCACGA + -269 1364 (28) 5515 PPP2CA 1 GTGACGTCACGC - -21 9825 2 GTGACGTCACCA + -30 8057 (29) 7533 YWHAH 1 GTGACGTCACCT + -341 8057 2 GTGACGTCACCT - -332 8057 (30) 2870 GPRK6 1 GTGACGTGATTG + -293 15730 (31) 672 BRCA1 1 GTGACGTGACCC + -1103 7822 2 ATGACGTAAAAG - -168 6892 (32) 23413 FREQ 1 GTGACGTTTGTG + -1164 11806 (33) 1509 CTSD 1 TTGACGTGAGTG + -832 11750 (34) 10036 CHAF1A 1 GTGACGTAAGAG + -442 11258 (35) 55872 TOPK 1 ATGACGTCAATT - -275 8046 2 TTGACGTCATAA + -284 2806 (36) 55719 FLJ10512 1 GTGACGTTTATC + -962 10038 (37) 57698 KIAA1598 1 GTGACGTATTTC - -897 9239 (38) 5663 PSEN1 1 ATGACGACAACG + -34 7138 (39) 56976 DKFZp547O146 1 CTGACGTCTGGG - -75 6497 (40) 5982 RFC2 1 ATGACGTCTGGG - -389 6473 (41) 29089 HSPC150 1 ATGACGTCTCAG + -199 5418 2 GAGACGTCATCC - -190 21 (42) 84930 FLJ14813 1 CTGACGTTTTCC - -455 4996 (43) 6240 RRM1 1 ATGACGTTACTC - -43 4893 2 GTAACGTCATTC + -52 16 (44) 9643 KIAA0026 1 GTGACGTGTCTG + -76 3914 (45) 10347 ABCA7 1 GTGACGAAAGCG + -229 2818 (46) 3156 HMGCR 1 CTGACGTATCTC - -980 2671 (47) 10635 PIR51 1 GTGACGAAAGTG + -200 2268 (48) 7280 TUBB 1 CTGACGTAATGC - -34 2259 (49) 56852 RAD18 1 CTGACGTAATGC + -13 2259 (50) 6428 SFRS3 1 GTGACGTATGGC - -285 2173 (51) 994 CDC25B 1 GTGACGACATGC + -326 1282 2 ATGACGTTTTGC + -579 843 (52) 861 RUNX1 1 ATGACGTTTTAG + -654 1971 (53) 2487 FRZB 1 ATGACGTTAATA + -137 1613 (54) 8336 H2AFN 1 ATGACGTTAATA + -148 1613 (55) 6782 STCH 1 GTGACGACTGAG - -162 1512 2 CTGACGTGTTGT + -1071 78 (56) 9801 MRPL19 1 TTGACGTGAGCT + -21 1471 (57) 57169 KIAA1404 1 CTGACGTCTTAT - -681 994 2 CTGACGAGTAAG - -895 125 (58) 11137 PWP1 1 ATGACGTCTGAA + -76 1107 (59) 397 ARHGDIB 1 CTGACGTTTATT - -892 731 (60) 2177 FANCD 1 ATGACGTGACGC - -47 692 (61) 23312 KIAA0856 1 CTGACGTATTTT + -494 672 (62) 2805 GOT1 1 CTGACGACAGCA + -835 616 (63) 25959 DKFZP434N161 1 ATGACGAGAGCC + -363 596 (64) 9493 KNSL5 1 ATGACGAAACTG - -225 584 (65) 10492 NSAP1 1 ATGACGTTTCCT - -1064 381 2 CTGACGTGACAA - -13 163 3 GTCACGTCAGCG + -22 32 (66) 64710 NUCKS 1 GTGACGAATCTG + -459 504 (67) 6009 RHEB2 1 ATGACGTGTCGG - -309 430 (68) 6446 SGK 1 CTGACGTTTCCT - -861 382 (69) 262 AMD1 1 TTGACGACTATT + -1007 334 (70) 55003 FLJ20624 1 CTGACGTATAAT + -95 314 (71) 7374 UNG 1 ATGACGATAAAC - -964 298 (72) 4247 MGAT2 1 CTGACGTGTCCT + -431 257 (73) 8543 LMO4 1 TTGACGAAAACT - -721 222 2 CCGACGTCAGCG - -28 17 (74) 51503 HSPC148 1 TTGACGTATAGT - -837 236 (75) 11004 KNSL6 1 ATGACGTTTTAA + -135 198 (76) 55771 FLJ11029 1 CTGACGAGTTTC + -818 194 (77) 55143 FLJ10468 1 CTGACGAATGAG - -4 191 (78) 55655 FLJ20510 1 TTGACGTGTCAT + -775 94 2 TTGACGTGTCAT + -418 94 (79) 7323 UBE2D3 1 TTGACGTGTTAA + -1061 170 (80) 3305 HSPA1L 1 GTGACGACTTAT - -432 136 (81) 4820 NKTR 1 CTGACGAGATGG + -203 124 (82) 55632 FLJ20333 1 GTGACGAAACTT + -294 112 (83) 10953 TOM34 1 CTGACGACTCTA - -941 110 (84) 5888 RAD51 1 TTGACGAATATT + -695 80 (85) 3022 H4F2 1 CTGACGTCCATG + -651 23 2 ATGACGAAATGT + -116 22 3 TGGACGTCAGCG - -642 21 (86) 8318 CDC45L 1 TTGACGAAAGAA - -1072 54 (87) 3148 HMG2 1 CTGACGATTATT - -18 52 (88) 8365 H4FH 1 ATGACGAAAGAA - -792 42 (89) 55646 FLJ20425 1 GTGACGCCAACG - -86 40 (90) 55082 FLJ10154 1 CTGACGATTTTT - -37 40 (91) 2730 GCLM 1 GTGAAGTCAACG - -591 37 (92) 10460 TACC3 1 ATGACGAGTGCT + -712 37 (93) 58516 TERA 1 GTGACGTCCGCC + -222 34 (94) 7150 TOP1 1 GCGACGTCAGCG - -102 32 (95) 11073 TOPBP1 1 GTGACGCCATCG - -136 31 (96) 6491 SIL 1 TTGACGAAATGA + -253 28 (97) 7414 VCL 1 ATGACGAGAAAA - -304 27 (98) 5635 PRPSAP1 1 GTGACCTCAACC - -675 27 (99) 4085 MAD2L1 1 ATGACGATTCCA - -254 27 (100) 79830 FLJ23151 1 GTGACGATTTAT + -434 27 (101) 1663 DDX11 1 ATGACGAGTTTA - -425 26 (102) 4171 MCM2 1 ATGACGTCGGCG - -59 24 (103) 1294 COL7A1 1 GTGAAGTCAGCC + -1007 23 (104) 23397 KIAA0074 1 GTGACGTCGCCG - -52 23 (105) 8975 USP13 1 GTGACGTCCCCG - -465 23 (106) 5864 RAB3A 1 GTGACGCCATCC - -60 22 (107) 7272 TTK 1 GTGAGGTCATCC + -1184 21 (108) 10600 USP16 1 GTGACGAATTGA - -248 19 (109) 1411 CRYBA1 1 TTGAAGTCAACC + -516 18 (110) 2168 FABP1 1 TTGGCGTCAACC - -1043 18 (111) 83461 MGC2577 1 CTGACGCCAATG + -742 17 (112) 9967 TRAP150 1 GTGACCTCATTC - -607 16 (113) 6430 SFRS5 1 TTGACGTCGTTC - -352 16 (114) 9666 KIAA0675 1 CTGAGGTCAATG + -1080 16