Supplementary Table B2. High scoring sites for E2F (M00516) found in promoters of cell cycle-regulated genes reported by Whitfield et al. (2002).  


(1)	  4175	    MCM6
		1	TTTGGCGCGAAA	+	-169	172278
		2	TTTGGCGCGAAA	+	-107	172278

(2)	  4174	    MCM5
		1	TTTGGCGCGAAA	-	-423	172278
		2	TTTCGCGGGAAA	-	-228	48540

(3)	 54962	FLJ20516
		1	TTTGGCGCCAAA	+	-58	82139

(4)	  6118	    RPA2
		1	TTTGGCGCGAAC	+	-359	54833
		2	ATTCGCGGGAAG	+	-39	3356

(5)	  4173	    MCM4
		1	TTTCGCGGGAAA	-	-252	48540

(6)	  1869	    E2F1
		1	TTTGGCGCGTAA	+	-12	24958
		2	TTTCGCGGCAAA	+	-29	23143

(7)	  9156	    EXO1
		1	TTTCGCGCGCTG	+	-35	39221

(8)	 27037	   HTF9C
		1	TTTGGCGGGAAG	-	-907	38960

(9)	  7884	    SLBP
		1	TTTGGCGGGAGA	-	-347	30494
		2	CTTGGCGGGCGG	-	-328	1855

(10)	 25896	DKFZP434B168
		1	TTTGGCGCGGAG	-	-196	25284
		2	TTTGGCGGCCGG	-	-208	6135

(11)	 84961	MGC15482
		1	TTTGGCGGGAGA	-	-1053	30494

(12)	 10765	
		1	TTTGGCGGGAGA	-	-257	30494

(13)	  8336	   H2AFN
		1	TTTCGCGCCCAG	+	-48	30102

(14)	  8347	   H2BFL
		1	TTTGGCGCGAGC	+	-370	29917

(15)	  9088	  PKMYT1
		1	TTTGGCGCGAGC	+	-156	29917

(16)	   993	  CDC25A
		1	TTTGGCGCCAAC	+	-62	26143

(17)	  9994	CASP8AP2
		1	TTTGGCGCCAAC	+	-206	26143

(18)	  5422	    POLA
		1	TTTGGCGCCCTG	-	-157	21532
		2	GTTGGCGCGGAA	+	-12	3598

(19)	 11073	  TOPBP1
		1	TTTCGCGCCAAC	-	-93	22704

(20)	 10036	  CHAF1A
		1	TTTGGCGGGAAC	-	-132	17789
		2	ATTGGCGCGCGG	+	-173	3934

(21)	   990	    CDC6
		1	TTTGGCGGGAGG	+	-41	21256

(22)	  3148	    HMG2
		1	TTTGGCGCGCTC	+	-1163	20621

(23)	 10905	  MAN1A2
		1	TTTCGCGCTCAG	+	-985	11747
		2	CTTCGCGCCAGC	+	-142	1785

(24)	  9184	    BUB3
		1	CTTGGCGCGATG	+	-267	10754

(25)	 29128	  ICBP90
		1	TTTCCCGCGCGG	+	-1075	4207
		2	TTTCGCGCGCCC	+	-816	2622
		3	TGTCGCGCCCGA	+	-834	2058

(26)	 84072	DKFZP434A1315
		1	CTTGGCGGGAAA	+	-70	8057

(27)	 51116	   MRPS2
		1	TGTGGCGCCCAA	-	-877	4345
		2	CTTGGCGGGAGG	+	-310	3064

(28)	  8318	  CDC45L
		1	TTTGGCGGGAGT	+	-19	7393

(29)	 57190	   SEPN1
		1	TTTGGCGGCCTG	-	-104	6985

(30)	 80263	FLJ13181
		1	TTTGGCGCCGGG	-	-362	6577

(31)	 51524	 HSPC196
		1	CTTGGCGCGCTG	-	-386	6510

(32)	  9988	   DMTF1
		1	TTTCGCGCGCCG	+	-44	5743

(33)	  7374	     UNG
		1	ATTGGCGCCAAG	-	-9	5679

(34)	 84057	     GAJ
		1	TTTGGCGCCGAC	-	-47	5504

(35)	  1663	   DDX11
		1	TTGCGCGCGCAG	-	-88	5306

(36)	 55355	DKFZp762E1312
		1	TGTGGCGCGCGA	+	-53	4972

(37)	  9768	KIAA0101
		1	TGTGGCGGGATA	+	-24	3034
		2	TTTCCCGCGCGC	-	-40	1921

(38)	  3091	   HIF1A
		1	CTTGGCGCTAAA	-	-1061	4621

(39)	 57026	Contig=NT_011520
		1	ATTGGCGCGCTG	-	-334	4479

(40)	  2908	   NR3C1
		1	CTTGGCGGCAAG	-	-417	2677
		2	TTGGGCGGGAGG	+	-918	1786

(41)	 10238	   HAN11
		1	TTTCGCGGGACA	-	-477	4415

(42)	   891	   CCNB1
		1	CTTCGCGCGATC	+	-69	4264

(43)	  2305	   FOXM1
		1	TTTCGCGCTGAG	+	-639	4085

(44)	   994	  CDC25B
		1	TTTCGCGGCAGC	-	-691	4018

(45)	 84930	FLJ14813
		1	TTTCCCGCGGAA	+	-893	3848

(46)	 63967	 CLASPIN
		1	TTTCCCGCCCAG	-	-26	3677

(47)	  9134	   CCNE2
		1	ATTGGCGCGGAA	+	-425	3598

(48)	 83695	MGC13204
		1	TTTCCCGGGCAA	-	-806	3589

(49)	  6456	  SH3GL2
		1	TGTGGCGCGCGG	-	-207	3466

(50)	  2177	   FANCD
		1	TTTCCCGCCAGG	-	-2	3314

(51)	 80308	   PP591
		1	TTTCCCGCCCTA	+	-270	3277

(52)	 10595	    IRE1
		1	TTTCCCGGGAGA	-	-141	3235

(53)	  6715	  SRD5A1
		1	CTTCGCGCGGAG	-	-171	3165

(54)	  6009	   RHEB2
		1	CTTCGCGCGGAG	-	-836	3165

(55)	 25959	DKFZP434N161
		1	ATTGGCGCCAGG	+	-75	3098

(56)	  8334	   H2AFL
		1	TTTGGCGGCGGA	-	-717	3061

(57)	 10873	     ME3
		1	ATTGGCGGGAGA	+	-37	3024

(58)	  4193	    MDM2
		1	TTTGGCGCTGTG	-	-244	2922

(59)	   898	   CCNE1
		1	TTCCGCGCGCAG	+	-707	2893

(60)	 10190	   APACD
		1	TATCGCGCGAGG	+	-46	2711

(61)	 80010	FLJ12888
		1	TTTGCCGCGCGC	-	-18	2212

(62)	 10403	     HEC
		1	TTTGGCGGGCCG	+	-34	2145

(63)	 27301	  APEXL2
		1	ATTGGCGGGAGG	-	-107	2108

(64)	  6430	   SFRS5
		1	TTTGGCGGCTGA	-	-2	2106

(65)	 55872	    TOPK
		1	TTTGGCGCCTGC	+	-118	2066

(66)	  8975	   USP13
		1	GTTGGCGCGGGA	-	-276	1963

(67)	 23595	   ORC3L
		1	TTTCCCGCGCGC	-	-2	1921

(68)	  9266	   PSCD2
		1	TGTCGCGCGGAG	-	-265	1918

(69)	  7112	    TMPO
		1	ATTGGCGGGCGA	-	-69	1831

(70)	   650	    BMP2
		1	TGTGGCGCGCTC	-	-686	1801

(71)	  5557	   PRIM1
		1	ATTGGCGGGAAC	-	-2	1764

(72)	 51715	   RAB23
		1	TTTCCCGCCCAC	-	-286	1679

(73)	  1875	    E2F5
		1	TTTGCCGCGTGA	+	-261	1663

(74)	  3312	   HSPA8
		1	TTGGGCGCGGGA	-	-515	1663

(75)	 10051	  SMC4L1
		1	CTTCCCGCGATA	+	-413	1636

(76)	 51240	LOC51240
		1	GTTCGCGCCCGG	+	-341	1629

(77)	 51512	   GTSE1
		1	CTTGGCGGCCAG	+	-696	1621

(78)	  9774	KIAA0164
		1	TCTCGCGGGAAG	-	-118	1612