Supplementary Table B1. High scoring sites for NF-Y (M00185) found in promoters of cell cycle-regulated genes reported by Whitfield et al. (2002). (1) 5514 PPP1R10 1 TAGCCAATCAG + -331 28324 2 TGACCAATGAG + -299 14825 (2) 28973 PTD017 1 TAGCCAATCAG - -496 28324 2 TGACCAATGAG - -528 14825 (3) 10238 HAN11 1 TAACCAATGAC + -131 30502 2 CAACCAATGAC + -249 8717 (4) 55655 FLJ20510 1 TAGCCAATCAC + -342 32259 2 GGGCCAATCAC + -32 6698 (5) 2870 GPRK6 1 TGACCAATCAC - -169 27777 2 GGACCAATCAC - -278 10419 (6) 55771 FLJ11029 1 CAACCAATCAC + -256 14340 2 CAGCCAATCAC + -107 9219 3 CAGCCAATCAG - -124 8094 4 GAGCCAATGAG - -470 6458 (7) 6118 RPA2 1 CAACCAATCAG - -248 12591 2 TCACCAATCAG - -363 12591 3 CAGCCAATCGG - -73 4481 (8) 5864 RAB3A 1 TAGCCAATCAG - -304 28324 (9) 2805 GOT1 1 TAACCAATCGC - -132 27777 (10) 6009 RHEB2 1 TGGCCAATCAC + -515 17858 2 TCGCCAATCAC + -564 9219 (11) 3148 HMG2 1 GAACCAATCAG + -18 16526 2 TGACCAATCGT + -79 7877 3 CCGCCAATCAG + -204 2313 (12) 23310 KIAA0056 1 CAACCAATCAC - -116 14340 2 GGACCAATCAC - -51 10419 (13) 57026 Contig=NT_011520 1 TAACCAATAAG - -590 13826 2 CAGCCAATCAG - -642 8094 3 CAGCCAATGGG - -380 2723 (14) 97 ACYP1 1 TGACCAATCAG - -529 24389 (15) 1032 CDKN2D 1 TGACCAATCAG + -251 24389 (16) 7153 TOP2A 1 TGGCCAATGAG - -324 9531 2 AAACCAATCAG - -240 8656 3 GAACCAATCGT - -173 5338 (17) 7272 TTK 1 GAACCAATCAC + -65 18822 2 TGACCAATAGG + -28 4237 (18) 3305 HSPA1L 1 GAGCCAATCAC + -409 12101 2 GGACCAATCAG + -325 9148 (19) 3156 HMGCR 1 TAGCCAATCGC - -122 17858 2 CAACCAATAGC - -247 2491 (20) 84615 ORP6 1 TGGCCAATCAG - -69 15679 2 TAACCACTGAC - -178 3902 (21) 8458 TTF2 1 CAACCAATCAC - -171 14340 2 CAGCCAATCAT - -140 4723 (22) 3149 HMG4 1 TGGCCAATCAG + -17 15679 2 CAGCCAATGGC + -63 3102 (23) 3014 H2AFX 1 GAGCCAATCAG + -68 10624 2 CGACCAATCAG + -154 6970 (24) 4751 NEK2 1 TAGCCAATGAG + -85 17217 (25) 6598 SMARCB1 1 TAGCCAATGAG - -199 17217 (26) 1164 CKS2 1 CAGCCAATCAG - -144 8094 2 CGACCAATCAC - -66 7938 (27) 3122 Contig=NT_007592 1 TGGCCAATCAG - -161 15679 (28) 23338 KIAA0239 1 TGGCCAATCAG - -971 15679 (29) 3312 HSPA8 1 TAACCAATGAT - -433 15626 (30) 8943 AP3D1 1 TGACCAATGAG + -231 14825 (31) 9133 CCNB2 1 TGGCCAATGAG + -62 9531 2 CAGCCAATGAG + -95 4920 (32) 4173 MCM4 1 TCACCAATCAC - -86 14340 (33) 9682 KIAA0677 1 TGGCCAATCAT - -212 9148 2 CAGCCAATGAG - -68 4920 (34) 990 CDC6 1 CAGCCAATCAG + -66 8094 2 CAGCCAATGAG - -132 4920 (35) 10362 HMG20B 1 CAACCAATCGC + -159 7938 2 GGACCAATCGG - -242 5064 (36) 9643 KIAA0026 1 CAGCCAATCAC - -100 9219 2 CGGCCAATGAC - -276 3102 (37) 3111 1 CAGCCAATCAC - -37 9219 2 TAGCCAATGTT + -386 2871 (38) 51585 PCF11 1 CAGCCAATCAC + -84 9219 2 CGGCCAATGAG + -224 2723 (39) 84520 Contig=NT_010113 1 GAACCAATGAC + -337 11441 (40) 10347 ABCA7 1 CAGCCAATCAG + -133 8094 2 AAACCAATGGG - -86 2912 (41) 8336 H2AFN 1 TAGCCAATGGC + -69 10855 (42) 3642 INSM1 1 GAGCCAATCAG - -448 10624 (43) 7398 USP1 1 AAGCCAATCAG - -644 5564 2 CAGCCAATCAT - -733 4723 (44) 4174 MCM5 1 GAACCAATGGG + -288 5561 2 CAGCCAATCAT + -371 4723 (45) 1063 CENPF 1 GGGCCAATCAG + -193 5881 2 TGACCAATAGG + -132 4237 (46) 10146 G3BP 1 TGGCCAATCGC - -451 9885 (47) 79149 MGC4161 1 AAACCAATCAC + -99 9858 (48) 6792 STK9 1 GAGCCAATGAG - -175 6458 2 GGACCAATGGG - -111 3078 (49) 23595 ORC3L 1 TGGCCAATGAG + -959 9531 (50) 6491 SIL 1 CGACCAATCAG - -131 6970 2 CGACCAATGAT + -371 2472 (51) 7112 TMPO 1 TCGCCAATCAC + -108 9219 (52) 10226 TIP47 1 GGACCAATCAG - -73 9148 (53) 80273 HMGE 1 GAGCCAATGAG - -275 6458 2 TCACCAATAAT - -133 2305 (54) 2534 FYN 1 CAACCAATGAC + -800 8717 (55) 54441 DKFZP434A0131 1 TGACCAATGAT + -742 8650 (56) 1663 DDX11 1 TGACCAATGGG - -636 8207 (57) 9184 BUB3 1 GGACCAATCGG + -107 5064 2 CAGCCAATGGC + -65 3102 (58) 10866 Contig=NT_027038 1 CAGCCAATCAG + -68 8094 (59) 9928 KIAA0042 1 CAGCCAATCAG + -40 8094 (60) 3091 HIF1A 1 CAGCCAATCAG - -247 8094 (61) 54491 FLJ11127 1 CAGCCAATCAG - -88 8094 (62) 54806 FLJ20069 1 TAACCAATAAT + -1061 8067 (63) 6464 SHC1 1 TGGCCAATAAG - -159 4920 2 AAGCCAATCGG - -249 3080 (64) 22974 C20orf1 1 GCACCAATCAG - -79 4723 2 GGGCCAATCGG + -126 3255 (65) 4175 MCM6 1 GAACCAATCGT - -68 5338 2 TGACCAATGAA - -110 2470 (66) 329 BIRC2 1 TAACCAATGTG + -502 7653 (67) 84571 HT023 1 TGACCAATAAG + -117 7653 (68) 8318 CDC45L 1 GGACCAATCGG + -41 5064 2 CAACCAATAGC - -51 2491 (69) 4436 MSH2 1 CAACCAATCAT - -93 7346 (70) 80025 FLJ11729 1 CAACCAATCAT + -704 7346 (71) 22903 KIAA0952 1 TCACCAATCAT - -285 7346 (72) 54820 FLJ20101 1 CGGCCAATCAG - -87 4481 2 CAGCCAATGGG + -61 2723 (73) 993 CDC25A 1 CCACCAATCAG - -69 3598 2 GGGCCAATGAG - -121 3575 (74) 29089 HSPC150 1 GGGCCAATCAC + -56 6698 (75) 3337 DNAJB1 1 GAGCCAATCGC - -269 6698 (76) 3833 KNSL2 1 GGGCCAATCGC - -193 3708 2 GGACCAATCGT - -164 2955 (77) 4026 LPP 1 AAGCCAATCAC - -1158 6338 (78) 6722 SRF 1 GGACCAATGGG + -88 3078 2 CAGCCAATAAC + -509 2893 (79) 9493 KNSL5 1 GGGCCAATCAG - -55 5881 (80) 4928 NUP98 1 GGGCCAATCAG - -402 5881 (81) 54478 FLJ10156 1 GAGCCAATCGG + -118 5881 (82) 81610 Contig=NT_011362 1 CAGCCAATAAC + -182 2893 2 CAGCCAATGGG + -110 2723 (83) 5885 RAD21 1 TAGCCAATAGC - -257 5604 (84) 9868 TOMM70A 1 TAGCCAATAGC + -412 5604 (85) 4863 NPAT 1 TGGCCAATAAC - -575 5604 (86) 5411 PNN 1 CAGCCAATGAC - -97 5604 (87) 10036 CHAF1A 1 CAGCCAATGAC + -326 5604 (88) 5422 POLA 1 AAGCCAATCAG - -56 5564 (89) 25896 DKFZP434B168 1 AAGCCAATCAG - -170 5564 (90) 7884 SLBP 1 GAACCAATGGG + -447 5561 (91) 26586 CKAP2 1 GAACCAATGGG + -34 5561 (92) 9768 KIAA0101 1 GAACCAATGGG + -88 5561 (93) 729 C6 1 TGTCCAATCAC + -1161 2976 2 ACACCAATCAG - -82 2473 (94) 9531 BAG3 1 GAACCAATCTC + -684 5379 (95) 7076 TIMP1 1 TATCCAATCAC - -217 5376 (96) 51003 LOC51003 1 GGACCAATCAT - -753 5338 (97) 4957 ODF2 1 TGGCCAATGGG + -944 5276 (98) 3298 HSF2 1 CAGCCAATCGC + -193 5103 (99) 3837 KPNB1 1 CAGCCAATCGC + -341 5103 (100) 10274 STAG1 1 CAGCCAATCGC - -245 5103 (101) 11130 ZWINT 1 CAGCCAATCGC + -74 5103 (102) 81611 MGC5350 1 TAGCCAATAGG + -296 4920 (103) 11065 UBCH10 1 CAGCCAATGAG - -272 4920 (104) 10600 USP16 1 CAGCCAATGAG - -18 4920 (105) 56852 RAD18 1 CAGCCAATCAT - -1111 4723 (106) 55156 FLJ10511 1 TATCCAATCAG - -97 4720 (107) 7280 TUBB 1 CGGCCAATCAG - -89 4481 (108) 10902 SMAP 1 CGGCCAATCAG + -408 4481 (109) 50809 1 CAGCCAATCGG - -138 4481 (110) 83695 MGC13204 1 TCGCCAATCGG + -37 4481 (111) 2305 FOXM1 1 TCGCCAATCGG - -153 4481 (112) 5347 PLK 1 CGGCCAATCAG + -53 4481 (113) 55165 FLJ10540 1 CAGCCAATCGG + -23 4481 (114) 9481 UCP4 1 CGGCCAATCAG + -281 4481 (115) 8930 MBD4 1 CGACCAATCGC - -59 4394 (116) 63967 CLASPIN 1 CCACCAATCAC - -115 4098 (117) 6772 STAT1 1 CCACCAATCAC - -52 4098 (118) 23528 ZNF281 1 CCACCAATCAC + -191 4098 (119) 3214 HOXB4 1 GAGCCAATGGC - -126 4072 (120) 3799 KIF5B 1 CGACCAATCGG - -190 3858 (121) 55075 UACA 1 CGACCAATCGG - -169 3858 (122) 51512 GTSE1 1 CGACCAATCGG + -528 3858 (123) 80010 FLJ12888 1 GGGCCAATCGC - -481 3708 (124) 7756 ZNF207 1 TCACCAATCTG + -393 3598 (125) 3434 IFIT1 1 CAACCAATCTG - -500 3598 (126) 1058 CENPA 1 GGGCCAATGAG - -120 3575 (127) 4335 MNT 1 GAGCCAATGGG - -782 3575 (128) 9212 STK12 1 GAGCCAATGGG + -105 3575 (129) 3832 KNSL1 1 GGACCAATGGC - -28 3506 (130) 29128 ICBP90 1 GAGCCAATAAG + -741 3334 (131) 9266 PSCD2 1 GGGCCAATCGG - -169 3255 (132) 51715 RAB23 1 CGGCCAATGAC - -1079 3102 (133) 84313 MGC10540 1 AAACCAATGAT - -1085 3070 (134) 3620 INDO 1 GAACCAATAAT - -1183 3026 (135) 55320 FLJ11186 1 GAACCAATGTG + -1061 2871 (136) 84914 Contig=NT_011104 1 GAACCAATAGG + -247 2871 (137) 5530 PPP3CA 1 TAGCCAATGAA + -433 2869 (138) 1316 COPEB 1 CGGCCAATCGC - -184 2825 (139) 6421 SFPQ 1 ACACCAATCAC - -943 2817 (140) 55122 FLJ10342 1 AAACCAATCTC - -435 2817 (141) 79075 MGC5528 1 GAACCAATCTT + -1119 2755 (142) 9401 RECQL4 1 CAGCCAATGGG - -152 2723 (143) 8438 RAD54L 1 CAGCCAATGGG + -630 2723 (144) 55556 HSRTSBETA 1 CGGCCAATGAG + -68 2723 (145) 1027 CDKN1B 1 CAGCCAATCTC + -272 2634 (146) 9994 CASP8AP2 1 CGGCCAATCAT - -115 2614 (147) 23204 ARL6IP 1 TGCCCAATCAG - -207 2613 (148) 57189 LCHN 1 TAGCCAATATG - -1186 2540 (149) 10190 APACD 1 CAGCCAATAAG + -30 2540 (150) 84961 MGC15482 1 CCGCCAATCAG - -1007 2313 (151) 55166 FLJ10545 1 CAACCAATAAT + -378 2305 (152) 7803 PTP4A1 1 CCACCAATCGC - -50 2268