Index by Author

April 2019; 29 (4)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Adams, Richard H.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  2. Almalvez, Miguel

  3. Ardin, Maude

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  4. Arielly, Rani

B

  1. Barrio, Alvaro Martinez

  2. Barseghyan, Hayk

  3. Baubec, Tuncay

  4. Bayón, Gustavo F.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  5. Beland, Frederick A.

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  6. Belhocine, Kamila

  7. Benayoun, Bérénice A.

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  8. Berest, Ivan

  9. Bernate, Jorge

  10. Betrán, Esther

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  11. Bharadwaj, Rajiv

  12. Bhattacharya, Surajit

  13. Bjornson, Keith

  14. Bjornsson, Hans T.

    • Coexpression patterns define epigenetic regulators associated with neurological dysfunction Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
      OPEN ACCESS ARTICLE

  15. Blackmon, Heath

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  16. Blane, Beth

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  17. Blumberg, Amit

    • Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution Genome Res. April 2019 29: 710.1; doi:10.1101/gr.248971.119
      OPEN ACCESS ARTICLE

  18. Bouaoun, Liacine

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  19. Boukas, Leandros

    • Coexpression patterns define epigenetic regulators associated with neurological dysfunction Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
      OPEN ACCESS ARTICLE

  20. Brescianini, Sonia

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  21. Brown, Nicholas M.

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  22. Brunet, Anne

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  23. Bueno, Clara

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  24. Burger, Lukas

C

  1. Cahais, Vincent

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  2. Cao, Han

  3. Card, Daren C.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  4. Carella, Antonella

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  5. Casey, Kerriann M.

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  6. Castoe, Todd A.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  7. Catalanotti, Claudia

  8. Chandra, Sreetama Sen

  9. Chathoth, Keerthi T.

    • Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome Genome Res. April 2019 29: 613-625; Published in Advance February 1, 2019, doi:10.1101/gr.246710.118
      OPEN ACCESS ARTICLE

  10. Chen, Chunyan

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  11. Chen, Hua

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  12. Chen, Xi

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  13. Chen, Yi-Wen

  14. Cheng, Alfred S.L.

    • New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation Genome Res. April 2019 29: 543-553; Published in Advance February 19, 2019, doi:10.1101/gr.240036.118

  15. Christensen, Jesper

  16. Church, Deanna M.

  17. Churchwell, Mona I.

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  18. Claire, Fabian

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  19. Coll, Francesc

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  20. Corander, Jukka

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  21. Corbin, Andrew B.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  22. Cubillo, Isabel

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

D

  1. Danko, Charles G.

    • Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution Genome Res. April 2019 29: 710.1; doi:10.1101/gr.248971.119
      OPEN ACCESS ARTICLE

  2. de Boer, Jan

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  3. Delaney, Josh

  4. Delgado-Calle, Jesús

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  5. Demuth, Jeffery P.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  6. Dorsett, Dale

    • Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila Genome Res. April 2019 29: 602-612; Published in Advance February 22, 2019, doi:10.1101/gr.243832.118
      OPEN ACCESS ARTICLE

  7. Dufault, Brandon

  8. Dulken, Ben W.

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  9. Dziulko, Adam

    • Improved discovery of genetic interactions using CRISPRiSeq across multiple environments Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
      OPEN ACCESS ARTICLE

E

  1. Ebenstein, Yuval

  2. Elnitski, Laura

    • Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression Genome Res. April 2019 29: 657-667; Published in Advance March 18, 2019, doi:10.1101/gr.247007.118
      OPEN ACCESS ARTICLE

  3. Esteller, Manel

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

F

  1. Fagnani, Corrado

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  2. Farré, Marta

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  3. Fehr, Adrian

  4. Fernández, Agustín F.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  5. Ferrero, Cecilia

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  6. Fiddes, Ian T.

  7. Fraga, Mario F.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  8. Fu, Yan

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

G

  1. Gabrieli, Tslil

  2. Galvin, Brendan

  3. Gao, Ge

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  4. Gao, Yuwei

    • New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation Genome Res. April 2019 29: 543-553; Published in Advance February 19, 2019, doi:10.1101/gr.240036.118

  5. Gao, Zhiqiang

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  6. García, María G.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  7. Garcia, Sarah

  8. García-Castro, Javier

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  9. Gause, Maria

    • Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila Genome Res. April 2019 29: 602-612; Published in Advance February 22, 2019, doi:10.1101/gr.243832.118
      OPEN ACCESS ARTICLE

  10. Gouliouris, Theodore

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  11. Grand, Ralph S.

  12. Graphodatsky, Alexander S.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  13. Grunwald, Assaf

  14. Gularek, Felix

  15. Guyton, Kathryn Z.

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

H

  1. Hales, Nicole R.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  2. Hansen, Kasper D.

    • Coexpression patterns define epigenetic regulators associated with neurological dysfunction Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
      OPEN ACCESS ARTICLE

  3. Harel, Itamar

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  4. Hartl, Dominik

  5. Hastie, Alex R.

  6. Havrilla, James M.

    • Coexpression patterns define epigenetic regulators associated with neurological dysfunction Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
      OPEN ACCESS ARTICLE

  7. He, Bin Z.

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  8. Heaton, Haynes

  9. Heguy, Adriana

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  10. Helin, Kristian

  11. Herschleb, Jill

  12. Hickey, Peter F.

    • Coexpression patterns define epigenetic regulators associated with neurological dysfunction Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
      OPEN ACCESS ARTICLE

  13. Hindson, Christopher

  14. Hollstein, Monica

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  15. Holt, Esty

  16. Horner, Carolyne

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  17. Huang, Di

    • Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression Genome Res. April 2019 29: 657-667; Published in Advance March 18, 2019, doi:10.1101/gr.247007.118
      OPEN ACCESS ARTICLE

I

  1. Isbel, Luke

J

  1. Jabara, Cassandra B.

  2. Jaffe, Mia

    • Improved discovery of genetic interactions using CRISPRiSeq across multiple environments Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
      OPEN ACCESS ARTICLE

  3. Jett, Susanna

  4. Jiang, Shuai

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  5. Johnson, Jennifer L.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  6. Johnson, Warren E.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  7. Juhasz, Matyas

K

  1. Keivanfar, Nikka

  2. Keβler, Sandra

  3. Kim, Jaebum

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  4. Korenjak, Michael

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  5. Krebs, Arnaud R.

  6. Kukekova, Anna V.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  7. Kulemzina, Anastasia I.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  8. Kundaje, Anshul

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE
    • Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution Genome Res. April 2019 29: 710.1; doi:10.1101/gr.248971.119
      OPEN ACCESS ARTICLE

  9. Kyriazopoulou-Panagiotopoulou, Sofia

L

  1. Lam, Ernest T.

  2. Larkin, Denis M.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  3. Lek, Monkol

  4. Levy, Sasha F.

    • Improved discovery of genetic interactions using CRISPRiSeq across multiple environments Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
      OPEN ACCESS ARTICLE

  5. Lewin, Harris A.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  6. Li, Le

    • New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation Genome Res. April 2019 29: 543-553; Published in Advance February 19, 2019, doi:10.1101/gr.240036.118

  7. Li, Qiye

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  8. Limmathurotsakul, Direk

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  9. Lin, Bill

  10. Liu, Alexander

  11. Long, Manyuan

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  12. Lowe, Adam

  13. Ludden, Catherine

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

M

  1. Ma, Jian

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  2. MacArthur, Daniel

  3. Mackessy, Stephen P.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  4. Mahamdallie, Shazia

  5. Maheshwari, Shamoni

  6. Mahmoudi, Salah

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  7. Makarewicz, Tony

  8. Mareschi, Katia

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  9. Margalit, Sapir

  10. Marks, Patrick

  11. Marshall, Jamie

  12. Martinez-Camblor, Pablo

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  13. McKay, James

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  14. Medda, Emanuela

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  15. Meik, Jesse M.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  16. Menéndez, Pablo

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  17. Mentink, Anouk

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  18. Meschi, Francesca

  19. Michaeli, Yael

  20. Miller, Brendan F.

    • Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression Genome Res. April 2019 29: 657-667; Published in Advance March 18, 2019, doi:10.1101/gr.247007.118
      OPEN ACCESS ARTICLE

  21. Mishmar, Dan

    • Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution Genome Res. April 2019 29: 710.1; doi:10.1101/gr.248971.119
      OPEN ACCESS ARTICLE

  22. Misulovin, Ziva

    • Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila Genome Res. April 2019 29: 602-612; Published in Advance February 22, 2019, doi:10.1101/gr.243832.118
      OPEN ACCESS ARTICLE

  23. Moradigaravand, Danesh

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  24. Moran, Sebastián

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

N

  1. Naydenova, Plamena

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  2. Ng, Alvin W.T.

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  3. Nifker, Gil

  4. Nishimura, Koutarou

  5. Nisticò, Lorenza

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

O

  1. O'Brien, Stephen J.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  2. O'Keefe, Christopher J.

  3. Olivier, Magali

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  4. Ordonez, Heather

  5. Ovcharenko, Ivan

    • Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression Genome Res. April 2019 29: 657-667; Published in Advance March 18, 2019, doi:10.1101/gr.247007.118
      OPEN ACCESS ARTICLE

P

  1. Pandey, Manuraj

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  2. Parkhill, Julian

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  3. Pasquesi, Giulia M.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  4. Patel, Pranav

  5. Peacock, Sharon J.

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  6. Pedersen, Marianne T.

  7. Perelman, Polina L.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  8. Pérez-Campo, Flor M.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  9. Perry, Blair W.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  10. Petrus-Reurer, Sandra

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  11. Petrykowska, Hanna M.

    • Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression Genome Res. April 2019 29: 657-667; Published in Advance March 18, 2019, doi:10.1101/gr.247007.118
      OPEN ACCESS ARTICLE

  12. Pevsner, Jonathan

  13. Pherson, Michelle

    • Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila Genome Res. April 2019 29: 602-612; Published in Advance February 22, 2019, doi:10.1101/gr.243832.118
      OPEN ACCESS ARTICLE

  14. Pollina, Elizabeth A.

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  15. Price, Andrew

  16. Proskuryakova, Anastasia A.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

Q

  1. Quinlan, Aaron R.

    • Coexpression patterns define epigenetic regulators associated with neurological dysfunction Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
      OPEN ACCESS ARTICLE

R

  1. Rahman, Nazneen

  2. Ramesh, Balan

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  3. Rasmussen, Kasper D.

  4. Raven, Kathy E.

    • Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment Genome Res. April 2019 29: 626-634; Published in Advance March 21, 2019, doi:10.1101/gr.232629.117
      OPEN ACCESS ARTICLE

  5. Reifenberger, Jeff

  6. Renard, Claire

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  7. Riancho, José A.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  8. Rice, Edward J.

    • Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution Genome Res. April 2019 29: 710.1; doi:10.1101/gr.248971.119
      OPEN ACCESS ARTICLE

  9. Robitaille, Alexis

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  10. Royall, Ariel

  11. Rozen, Steven G.

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  12. Ruark, Elise

  13. Ryder, Oliver A.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

S

  1. Schield, Drew R.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  2. Schnall-Levin, Michael

  3. Schübeler, Dirk

  4. Seal, Sheila

  5. Shah, Preyas

  6. Shao, Yi

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  7. Sharim, Hila

  8. Shen, Hao

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  9. Sherlock, Gavin

    • Improved discovery of genetic interactions using CRISPRiSeq across multiple environments Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
      OPEN ACCESS ARTICLE

  10. Simón-Carrasco, Lucía

  11. Singh, Param Priya

    • Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
      OPEN ACCESS ARTICLE

  12. Smith, Cara F.

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  13. Smith, Justin D.

    • Improved discovery of genetic interactions using CRISPRiSeq across multiple environments Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
      OPEN ACCESS ARTICLE

  14. St.Onge, Robert P.

    • Improved discovery of genetic interactions using CRISPRiSeq across multiple environments Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
      OPEN ACCESS ARTICLE

  15. Stafford, David

  16. Stampfer, Martha R.

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  17. Stazi, Maria A.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  18. Stolzing, Alexandra

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

T

  1. Toccaceli, Virgilia

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  2. Tollis, Marc

    • The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118

  3. Toraño, Estela G.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

  4. Torchinsky, Dmitry

U

  1. Urdinguio, Rocío G.

    • Corrigendum: H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Res. April 2019 29: 710.2; doi:10.1101/gr.249417.119
      OPEN ACCESS ARTICLE

V

  1. Vassiliou, George S.

  2. Vilain, Eric

  3. Villar, Stephanie

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

W

  1. Wagner, Kathryn R.

  2. Warren, Wesley C.

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  3. Weinhold, Elmar

  4. Williams, Stephen

  5. Wirbelauer, Christiane

  6. Wu, Indira

  7. Wu, Qiong

    • New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation Genome Res. April 2019 29: 543-553; Published in Advance February 19, 2019, doi:10.1101/gr.240036.118

X

  1. Xiong, Yingqi

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  2. Xu, Andrew Wei

Y

  1. Yip, Kevin Y.

    • New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation Genome Res. April 2019 29: 543-553; Published in Advance February 19, 2019, doi:10.1101/gr.240036.118

  2. Yu, Daqi

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

Z

  1. Zabet, Nicolae Radu

    • Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome Genome Res. April 2019 29: 613-625; Published in Advance February 1, 2019, doi:10.1101/gr.246710.118
      OPEN ACCESS ARTICLE

  2. Zaugg, Judith B.

  3. Zavadil, Jiri

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  4. Zhang, Guojie

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  5. Zhang, Yang

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  6. Zhang, Yong E.

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  7. Zhao, Shilei

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

  8. Zhivagui, Maria

    • Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
      OPEN ACCESS ARTICLE

  9. Zhou, Yang

    • Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118

  10. Zhu, Zhenglin

    • GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
      OPEN ACCESS ARTICLE

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