TY  - JOUR
A1  - Farahbod, Marjan
A1  - Diab, Aboud
A1  - Sud, Paul
A1  - Kagda, Meenakshi S.
A1  - Whaling, Ian
A1  - Foroozandeh, Mehdi
A1  - Goel, Ishan
A1  - Daneshpajouh, Habib
A1  - Hitz, Benjamin
A1  - Cherry, J. Michael
A1  - Libbrecht, Maxwell W.
T1  - Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway
Y1  - 2025/10/06 
JF  - Genome Research 
JO  - Genome Research 
DO  - 10.1101/gr.280633.125 
SP  - gr.280633.125 
UR  - http://genome.cshlp.org/content/early/2025/10/06/gr.280633.125.abstract 
N2  - The fourth and final phase of the ENCODE consortium has newly profiled epigenetic activity in hundreds of human tissues. Chromatin state annotations created by segmentation and genome annotation (SAGA) methods such as Segway have emerged as the predominant integrative summary of such data sets. Here, we present the ENCODE4 Catalog of Segway Annotations, a set of sample-specific genome-wide chromatin state annotations of 234 human biosamples inferred from 1,794 genomics experiments. This catalog identifies genomic elements, accurately captures cell type-specific regulatory patterns, and facilitates discovery of elements involved in phenotype and disease. 
ER  -