TY - JOUR A1 - Reid, Adam James A1 - Blake, Damer Peter A1 - Ansari, Hifzur Rahman A1 - Billington, Karen A1 - Browne, Hilary P A1 - Bryant, Josephine M A1 - Dunn, Matthew A1 - Hung, Stacy S A1 - Kawahara, Fumiya A1 - Miranda-Saavedra, Diego A1 - Malas, Tareq A1 - Mourier, Tobias A1 - Naghra, Hardeep A1 - Nair, Mridul A1 - Otto, Thomas Dan A1 - Rawlings, Neil David A1 - Rivailler, Pierre A1 - Sanchez-Flores, Alejandro A1 - Sanders, Mandy A1 - Subramaniam, Chandra A1 - Tay, Yea-Ling A1 - Woo, Yong A1 - Wu, Xikun A1 - Barrell, Bart A1 - Dear, Paul H A1 - Doerig, Christian A1 - Gruber, Arthur A1 - Ivens, Alasdair C A1 - Parkinson, John A1 - Rajandream, Marie-Adèle A1 - Shirley, Martin William A1 - Wan, Kiew-Lan A1 - Berriman, Matthew A1 - Tomley, Fiona M A1 - Pain, Arnab T1 - Genomic analysis of the causative agents of coccidiosis in domestic chickens Y1 - 2014/07/11 JF - Genome Research JO - Genome Research DO - 10.1101/gr.168955.113 SP - gr.168955.113 UR - http://genome.cshlp.org/content/early/2014/07/11/gr.168955.113.abstract N2 - Global production of chickens has trebled in the past two decades and they are now the most important source of dietary animal protein worldwide. Chickens are subject to many infectious diseases that reduce their performance and productivity. Coccidiosis, caused by apicomplexan protozoa of the genus Eimeria, is one of the most important poultry diseases. Understanding the biology of Eimeria parasites underpins development of new drugs and vaccines needed to improve global food security. We have produced annotated genome sequences of all seven species of Eimeria that infect domestic chickens, which reveal the full extent of previously described repeat-rich and repeat-poor regions and show that these parasites possess the most repeat-rich proteomes ever described. Furthermore, while no other apicomplexan has been found to possess retrotransposons, Eimeria is home to a family of chromoviruses. Analysis of Eimeria genes involved in basic biology and host-parasite interaction highlights adaptations to a relatively simple developmental life cycle and a complex array of co-expressed surface proteins involved in host cell binding. ER -